MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.4 nTPM
HPA Brain:16.6 nTPM
GTEx:7.4 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:19.1 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.1
2586 Male, age 75, left hemisphere 16.4
1870 Female, age 42, unknown 13.0
1833 Male, age 53, unknown 12.9
2411 Female, age 72, unknown 12.8
1830 Male, age 51, unknown 12.3
2019 Male, age 18, unknown 11.0
2219 Male, age 76, both hemispheres 10.8
1827 Male, age 72, unknown 10.7
2666 Male, age 74, left hemisphere 10.6
2828 Female, age 72, unknown 10.5
Dorsal raphe nucleus
nTPM: 15.1
2047 Male, age 72, unknown 17.0
2016 Female, age 72, unknown 15.7
1828 Male, age 53, unknown 15.3
2298 Female, age 72, unknown 14.3
2750 Male, age 76, both hemispheres 13.1
Inferior colliculus
nTPM: 10.7
2849 Male, age 72, unknown 11.9
1848 Female, age 42, unknown 11.2
1890 Male, age 53, unknown 10.2
2097 Female, age 72, unknown 9.6
Median raphe nucleus
nTPM: 16.6
2220 Male, age 76, midline 16.6
Periaquaductal grey, anterior
nTPM: 11.2
1947 Male, age 18, unknown 12.1
1795 Male, age 51, unknown 11.6
2502 Female, age 75, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 14.8
2850 Male, age 76, both hemispheres 18.9
1840 Male, age 53, unknown 16.0
2464 Female, age 72, unknown 12.4
1831 Male, age 72, unknown 11.8
Periaquaductal grey, lateral
nTPM: 14.0
2272 Male, age 74, both hemispheres 15.7
2140 Male, age 76, both hemispheres 15.6
2053 Male, age 18, unknown 10.8
Pretectal area
nTPM: 11.3
2224 Female, age 72, unknown 14.9
2825 Male, age 18, unknown 14.8
2273 Male, age 74, both hemispheres 12.7
2407 Male, age 75, both hemispheres 11.4
2316 Male, age 76, right hemisphere 11.3
2667 Female, age 75, unknown 10.9
1815 Male, age 53, unknown 10.2
1817 Female, age 42, unknown 10.1
1944 Female, age 72, unknown 9.6
2007 Male, age 72, unknown 9.5
1816 Male, age 51, unknown 8.5
Red nucleus
nTPM: 10.8
2584 Male, age 75, left hemisphere 12.6
2769 Male, age 72, unknown 12.3
2227 Male, age 72, unknown 11.7
1821 Female, age 72, unknown 11.3
2785 Male, age 18, unknown 11.2
1904 Male, age 53, unknown 11.0
2588 Male, age 74, left hemisphere 10.9
1865 Male, age 51, unknown 10.8
2725 Female, age 75, unknown 10.2
1954 Female, age 42, unknown 9.9
2823 Male, age 76, right hemisphere 9.5
2503 Female, age 72, unknown 8.7
Substantia nigra
nTPM: 12.3
2699 Male, age 18, unknown 14.1
1851 Male, age 51, unknown 13.4
2665 Male, age 74, both hemispheres 13.4
1916 Female, age 42, unknown 13.2
2241 Male, age 72, unknown 12.9
2590 Female, age 75, unknown 12.6
1941 Male, age 53, unknown 11.9
2583 Male, age 75, right hemisphere 11.6
1889 Female, age 72, unknown 10.6
2409 Female, age 72, unknown 8.8
Superior colliculus
nTPM: 10.5
2664 Male, age 75, both hemispheres 13.5
2668 Female, age 75, unknown 12.4
1913 Female, age 42, unknown 10.7
1796 Male, age 53, unknown 10.6
2587 Male, age 74, left hemisphere 10.4
1995 Male, age 72, unknown 10.2
2087 Female, age 72, unknown 10.1
1895 Male, age 76, right hemisphere 9.7
1839 Male, age 51, unknown 9.5
2261 Male, age 18, unknown 8.4
Ventral tegmental area
nTPM: 13.3
1942 Male, age 51, unknown 15.9
1915 Female, age 42, unknown 13.8
2410 Female, age 72, unknown 13.6
2218 Male, age 76, both hemispheres 12.6
2021 Male, age 53, unknown 12.4
2223 Female, age 72, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.4
Samples: 183

Max nTPM: 14.3
Min nTPM: 3.2
Std nTPM: 1.6
Median nTPM: 7.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 14.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 12.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 11.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 11.4
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 10.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 10.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 10.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 10.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 10.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 10.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.9
FF:10158-103A5 76 years, female 18.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 15.6
Sample A Female 23.2
Sample B Female 15.6
Sample C Male 17.8
Sample D Male 16.5
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 25.5
Min nTPM: 15.3
Sample A Female 24.8
Sample B Female 15.3
Sample C Male 25.5
Sample D Male 16.6
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 16.3
Min nTPM: 13.9
Sample B Female 13.9
Sample C Male 16.3
Sample D Male 14.8
Superior colliculi
nTPM: 21.3
Samples: 4

Max nTPM: 23.3
Min nTPM: 19.6
Sample A Female 23.3
Sample B Female 21.9
Sample C Male 20.4
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 20.5
Min nTPM: 18.3
Sample A Male 20.5
Sample B Male 18.4
Sample C Female 18.3
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
148 Antisense, RP_Baylor_253960, Mouse strain C57BL/6J (56 days, male) 1.3
147 Antisense, RP_Baylor_253960, Mouse strain C57BL/6J (56 days, male) 0.6

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