MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA Brain:148.3 nTPM
GTEx:73.5 nTPM
FANTOM5:378.6 Scaled Tags Per Million
Pig:154.0 nTPM
Mouse:164.4 nTPM
Allen mouse:16.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 148.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 123.3
2219 Male, age 76, both hemispheres 171.4
2666 Male, age 74, left hemisphere 144.0
1827 Male, age 72, unknown 127.4
1870 Female, age 42, unknown 126.1
2828 Female, age 72, unknown 125.9
2586 Male, age 75, left hemisphere 120.8
1833 Male, age 53, unknown 110.9
2411 Female, age 72, unknown 104.7
2019 Male, age 18, unknown 101.3
1830 Male, age 51, unknown 101.0
Dorsal raphe nucleus
nTPM: 125.0
2298 Female, age 72, unknown 149.1
2047 Male, age 72, unknown 138.3
2750 Male, age 76, both hemispheres 137.8
1828 Male, age 53, unknown 105.7
2016 Female, age 72, unknown 93.9
Inferior colliculus
nTPM: 113.4
2849 Male, age 72, unknown 130.0
1848 Female, age 42, unknown 119.9
2097 Female, age 72, unknown 115.7
1890 Male, age 53, unknown 88.1
Median raphe nucleus
nTPM: 148.3
2220 Male, age 76, midline 148.3
Periaquaductal grey, anterior
nTPM: 135.5
1947 Male, age 18, unknown 139.8
1795 Male, age 51, unknown 134.4
2502 Female, age 75, unknown 132.2
Periaquaductal grey, dorsal
nTPM: 101.7
1840 Male, age 53, unknown 123.6
2850 Male, age 76, both hemispheres 119.7
1831 Male, age 72, unknown 98.5
2464 Female, age 72, unknown 65.1
Periaquaductal grey, lateral
nTPM: 102.9
2053 Male, age 18, unknown 112.4
2140 Male, age 76, both hemispheres 106.0
2272 Male, age 74, both hemispheres 90.4
Pretectal area
nTPM: 132.6
1944 Female, age 72, unknown 168.4
1816 Male, age 51, unknown 160.1
2224 Female, age 72, unknown 156.1
2007 Male, age 72, unknown 148.1
1817 Female, age 42, unknown 144.3
1815 Male, age 53, unknown 140.1
2825 Male, age 18, unknown 127.0
2667 Female, age 75, unknown 118.7
2407 Male, age 75, both hemispheres 108.9
2316 Male, age 76, right hemisphere 95.8
2273 Male, age 74, both hemispheres 90.8
Red nucleus
nTPM: 103.3
2725 Female, age 75, unknown 133.9
2588 Male, age 74, left hemisphere 125.5
2584 Male, age 75, left hemisphere 110.7
2785 Male, age 18, unknown 106.6
2823 Male, age 76, right hemisphere 104.5
1904 Male, age 53, unknown 98.3
1821 Female, age 72, unknown 96.5
2503 Female, age 72, unknown 93.9
2227 Male, age 72, unknown 93.7
1865 Male, age 51, unknown 92.4
1954 Female, age 42, unknown 92.3
2769 Male, age 72, unknown 91.8
Substantia nigra
nTPM: 134.2
1916 Female, age 42, unknown 168.6
1941 Male, age 53, unknown 156.1
1889 Female, age 72, unknown 153.9
1851 Male, age 51, unknown 147.2
2409 Female, age 72, unknown 133.8
2665 Male, age 74, both hemispheres 131.0
2241 Male, age 72, unknown 128.8
2699 Male, age 18, unknown 119.1
2590 Female, age 75, unknown 109.6
2583 Male, age 75, right hemisphere 93.9
Superior colliculus
nTPM: 122.9
2087 Female, age 72, unknown 151.4
2261 Male, age 18, unknown 142.0
1796 Male, age 53, unknown 131.7
1895 Male, age 76, right hemisphere 127.3
2668 Female, age 75, unknown 126.7
1839 Male, age 51, unknown 118.4
2664 Male, age 75, both hemispheres 113.5
1913 Female, age 42, unknown 111.9
2587 Male, age 74, left hemisphere 107.1
1995 Male, age 72, unknown 99.1
Ventral tegmental area
nTPM: 123.5
1915 Female, age 42, unknown 138.7
2218 Male, age 76, both hemispheres 136.9
1942 Male, age 51, unknown 124.6
2021 Male, age 53, unknown 121.5
2223 Female, age 72, unknown 117.3
2410 Female, age 72, unknown 101.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.5
Samples: 183

Max nTPM: 172.0
Min nTPM: 22.1
Std nTPM: 23.9
Median nTPM: 68.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 172.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 161.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 140.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 138.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 129.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 126.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 124.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 123.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 118.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 118.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 117.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 378.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 378.6
FF:10158-103A5 76 years, female 378.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 154.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 147.7
Samples: 4

Max nTPM: 197.7
Min nTPM: 104.8
Sample A Female 178.5
Sample B Female 104.8
Sample C Male 197.7
Sample D Male 109.8
Midbrain
nTPM: 154.0
Samples: 4

Max nTPM: 214.8
Min nTPM: 93.4
Sample A Female 93.4
Sample B Female 141.3
Sample C Male 214.8
Sample D Male 166.6
Periaqueductal gray
nTPM: 130.0
Samples: 3

Max nTPM: 155.6
Min nTPM: 106.2
Sample B Female 128.3
Sample C Male 155.6
Sample D Male 106.2
Superior colliculi
nTPM: 137.2
Samples: 4

Max nTPM: 162.5
Min nTPM: 74.0
Sample A Female 154.9
Sample B Female 74.0
Sample C Male 162.5
Sample D Male 157.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 164.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.4
Samples: 4

Max nTPM: 169.0
Min nTPM: 160.0
Sample A Male 160.0
Sample B Male 162.8
Sample C Female 165.8
Sample D Female 169.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.8
79556696 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 16.8
80525654 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 10.9

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