A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
129.3
nTPM
Monaco:
28.4
nTPM
Schmiedel:
40.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.3
HPA sample
nTPM
NK-cell nTPM: 129.3
Samples: 6
Max nTPM: 173.1
Min nTPM: 55.3
P10809_1013
55.3
P10809_1033
169.1
P10809_1052
170.9
P10809_1071
149.3
P10809_1093
58.2
P10809_1103
173.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.4
Monaco sample
nTPM
NK-cell nTPM: 28.4
Samples: 4
Max nTPM: 34.1
Min nTPM: 21.9
RHH5316_R3683
34.1
RHH5224_R3596
31.8
RHH5253_R3625
21.9
RHH5282_R3654
25.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.4
Schmiedel sample id
TPM
NK-cell TPM: 40.4
Samples: 90
Max TPM: 60.9
Min TPM: 20.3
NK_1
60.9
NK_2
60.6
NK_3
60.2
NK_4
59.6
NK_5
57.2
NK_6
56.6
NK_7
56.3
NK_8
54.9
NK_9
53.9
NK_10
53.8
NK_11
53.4
NK_12
53.4
NK_13
52.4
NK_14
50.0
NK_15
49.2
NK_16
49.0
NK_17
48.8
NK_18
48.5
NK_19
48.5
NK_20
48.4
NK_21
48.4
NK_22
48.3
NK_23
47.8
NK_24
47.7
NK_25
47.3
NK_26
47.0
NK_27
46.0
NK_28
45.9
NK_29
45.6
NK_30
45.2
NK_31
44.4
NK_32
44.3
NK_33
44.3
NK_34
44.3
NK_35
44.3
NK_36
43.8
NK_37
43.3
NK_38
42.5
NK_39
42.5
NK_40
42.4
NK_41
42.2
NK_42
41.9
NK_43
41.6
NK_44
41.6
NK_45
41.3
NK_46
41.1
NK_47
40.2
NK_48
40.1
NK_49
40.0
NK_50
39.9
NK_51
39.3
NK_52
38.5
NK_53
38.5
NK_54
38.5
NK_55
36.9
NK_56
36.7
NK_57
36.6
NK_58
36.5
NK_59
36.3
NK_60
35.7
NK_61
35.7
NK_62
35.0
NK_63
34.9
NK_64
34.9
NK_65
34.6
NK_66
34.4
NK_67
33.8
NK_68
33.5
NK_69
32.4
NK_70
31.7
NK_71
31.7
NK_72
31.6
NK_73
31.6
NK_74
31.5
NK_75
31.0
NK_76
30.7
NK_77
30.5
NK_78
28.0
NK_79
27.4
NK_80
27.0
NK_81
26.9
NK_82
26.8
NK_83
26.1
NK_84
23.3
NK_85
23.3
NK_86
22.0
NK_87
21.4
NK_88
20.6
NK_89
20.4
NK_90
20.3
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