A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
147.9
nTPM
Monaco:
30.6
nTPM
Schmiedel:
17.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.9
HPA sample
nTPM
Classical monocyte nTPM: 147.9
Samples: 6
Max nTPM: 212.2
Min nTPM: 74.8
P10809_1003
74.8
P10809_1020
160.7
P10809_1039
198.1
P10809_1058
114.5
P10809_1080
127.1
P10809_1107
212.2
Intermediate monocyte nTPM: 141.8
Samples: 6
Max nTPM: 220.9
Min nTPM: 91.2
P10809_1004
91.2
P10809_1023
168.9
P10809_1042
137.2
P10809_1061
124.1
P10809_1081
108.2
P10809_1108
220.9
Non-classical monocyte nTPM: 120.0
Samples: 5
Max nTPM: 174.2
Min nTPM: 57.1
P10809_1005
95.4
P10809_1053
152.2
P10809_1072
57.1
P10809_1082
120.9
P10809_1109
174.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.6
Monaco sample
nTPM
Classical monocyte nTPM: 25.2
Samples: 4
Max nTPM: 37.0
Min nTPM: 12.0
RHH5313_R3680
37.0
RHH5221_R3593
12.0
RHH5250_R3622
25.2
RHH5279_R3651
26.7
Intermediate monocyte nTPM: 30.7
Samples: 4
Max nTPM: 42.1
Min nTPM: 20.7
RHH5314_R3681
42.1
RHH5222_R3594
24.1
RHH5251_R3623
20.7
RHH5280_R3652
35.8
Non-classical monocyte nTPM: 23.2
Samples: 4
Max nTPM: 29.8
Min nTPM: 18.3
RHH5315_R3682
29.8
RHH5223_R3595
18.3
RHH5252_R3624
19.0
RHH5281_R3653
25.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
Schmiedel sample id
TPM
Classical monocyte TPM: 17.0
Samples: 91
Max TPM: 26.3
Min TPM: 8.6
MONOCYTES_1
26.3
MONOCYTES_2
25.4
MONOCYTES_3
24.1
MONOCYTES_4
23.9
MONOCYTES_5
23.5
MONOCYTES_6
23.3
MONOCYTES_7
23.1
MONOCYTES_8
23.1
MONOCYTES_9
23.0
MONOCYTES_10
22.9
MONOCYTES_11
22.8
MONOCYTES_12
22.7
MONOCYTES_13
22.6
MONOCYTES_14
22.3
MONOCYTES_15
22.0
MONOCYTES_16
21.9
MONOCYTES_17
21.8
MONOCYTES_18
21.7
MONOCYTES_19
21.2
MONOCYTES_20
20.9
MONOCYTES_21
20.8
MONOCYTES_22
20.5
MONOCYTES_23
20.5
MONOCYTES_24
20.0
MONOCYTES_25
20.0
MONOCYTES_26
19.9
MONOCYTES_27
19.7
MONOCYTES_28
19.7
MONOCYTES_29
19.6
MONOCYTES_30
19.6
MONOCYTES_31
19.5
MONOCYTES_32
19.4
MONOCYTES_33
19.4
MONOCYTES_34
19.3
MONOCYTES_35
19.1
MONOCYTES_36
18.7
MONOCYTES_37
18.5
MONOCYTES_38
18.4
MONOCYTES_39
18.1
MONOCYTES_40
18.0
MONOCYTES_41
18.0
MONOCYTES_42
17.6
MONOCYTES_43
17.6
MONOCYTES_44
17.2
MONOCYTES_45
17.0
MONOCYTES_46
16.9
MONOCYTES_47
16.6
MONOCYTES_48
16.5
MONOCYTES_49
16.1
MONOCYTES_50
16.0
MONOCYTES_51
15.8
MONOCYTES_52
15.8
MONOCYTES_53
15.6
MONOCYTES_54
15.6
MONOCYTES_55
15.2
MONOCYTES_56
15.1
MONOCYTES_57
15.0
MONOCYTES_58
14.9
MONOCYTES_59
14.8
MONOCYTES_60
14.8
MONOCYTES_61
14.7
MONOCYTES_62
14.6
MONOCYTES_63
14.4
MONOCYTES_64
14.3
MONOCYTES_65
14.2
MONOCYTES_66
14.1
MONOCYTES_67
13.8
MONOCYTES_68
13.7
MONOCYTES_69
13.7
MONOCYTES_70
13.6
MONOCYTES_71
13.4
MONOCYTES_72
13.3
MONOCYTES_73
13.2
MONOCYTES_74
12.9
MONOCYTES_75
12.8
MONOCYTES_76
12.3
MONOCYTES_77
12.1
MONOCYTES_78
11.9
MONOCYTES_79
11.8
MONOCYTES_80
11.8
MONOCYTES_81
11.7
MONOCYTES_82
11.6
MONOCYTES_83
11.3
MONOCYTES_84
10.4
MONOCYTES_85
10.2
MONOCYTES_86
9.6
MONOCYTES_87
9.2
MONOCYTES_88
8.8
MONOCYTES_89
8.7
MONOCYTES_90
8.7
MONOCYTES_91
8.6
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Non-classical monocyte TPM: 16.5
Samples: 90
Max TPM: 27.7
Min TPM: 6.7
M2_1
27.7
M2_2
23.5
M2_3
23.5
M2_4
22.9
M2_5
22.6
M2_6
22.4
M2_7
22.1
M2_8
22.0
M2_9
21.6
M2_10
21.5
M2_11
21.5
M2_12
21.0
M2_13
20.9
M2_14
20.7
M2_15
20.6
M2_16
20.3
M2_17
20.3
M2_18
20.3
M2_19
20.2
M2_20
20.2
M2_21
20.2
M2_22
20.1
M2_23
20.1
M2_24
20.1
M2_25
19.3
M2_26
19.1
M2_27
19.1
M2_28
18.7
M2_29
18.6
M2_30
18.5
M2_31
18.5
M2_32
18.4
M2_33
18.1
M2_34
18.1
M2_35
18.1
M2_36
18.0
M2_37
18.0
M2_38
17.9
M2_39
17.9
M2_40
17.4
M2_41
17.3
M2_42
17.3
M2_43
17.3
M2_44
17.2
M2_45
17.1
M2_46
17.1
M2_47
17.0
M2_48
17.0
M2_49
17.0
M2_50
16.8
M2_51
16.6
M2_52
16.5
M2_53
16.1
M2_54
15.9
M2_55
15.9
M2_56
15.9
M2_57
15.7
M2_58
15.5
M2_59
15.4
M2_60
15.0
M2_61
14.9
M2_62
14.8
M2_63
14.8
M2_64
14.7
M2_65
14.4
M2_66
14.0
M2_67
13.2
M2_68
12.6
M2_69
12.6
M2_70
12.4
M2_71
12.4
M2_72
12.2
M2_73
12.1
M2_74
12.0
M2_75
12.0
M2_76
11.8
M2_77
11.4
M2_78
10.9
M2_79
10.8
M2_80
10.8
M2_81
10.4
M2_82
9.9
M2_83
9.7
M2_84
9.5
M2_85
9.3
M2_86
9.2
M2_87
8.6
M2_88
7.8
M2_89
7.5
M2_90
6.7
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