MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:149.3 nTPM
GTEx:14.9 nTPM
FANTOM5:123.3 Scaled Tags Per Million
Pig:62.0 nTPM
Mouse:22.6 nTPM
Allen mouse:9.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 149.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.6
2586 Male, age 75, left hemisphere 194.1
1833 Male, age 53, unknown 156.5
2828 Female, age 72, unknown 149.2
1830 Male, age 51, unknown 143.9
2666 Male, age 74, left hemisphere 138.1
2411 Female, age 72, unknown 137.9
2019 Male, age 18, unknown 135.5
2219 Male, age 76, both hemispheres 131.4
1827 Male, age 72, unknown 129.1
1870 Female, age 42, unknown 119.9
Dorsal raphe nucleus
nTPM: 117.7
2016 Female, age 72, unknown 129.6
2047 Male, age 72, unknown 128.2
2750 Male, age 76, both hemispheres 114.7
1828 Male, age 53, unknown 113.0
2298 Female, age 72, unknown 103.1
Inferior colliculus
nTPM: 149.3
2849 Male, age 72, unknown 175.4
1890 Male, age 53, unknown 153.7
1848 Female, age 42, unknown 151.3
2097 Female, age 72, unknown 116.9
Median raphe nucleus
nTPM: 110.7
2220 Male, age 76, midline 110.7
Periaquaductal grey, anterior
nTPM: 126.7
2502 Female, age 75, unknown 149.1
1947 Male, age 18, unknown 122.1
1795 Male, age 51, unknown 109.1
Periaquaductal grey, dorsal
nTPM: 145.8
1840 Male, age 53, unknown 167.2
2850 Male, age 76, both hemispheres 163.0
2464 Female, age 72, unknown 140.6
1831 Male, age 72, unknown 112.5
Periaquaductal grey, lateral
nTPM: 130.8
2140 Male, age 76, both hemispheres 151.1
2053 Male, age 18, unknown 136.8
2272 Male, age 74, both hemispheres 104.4
Pretectal area
nTPM: 139.5
1815 Male, age 53, unknown 156.0
2667 Female, age 75, unknown 154.3
1817 Female, age 42, unknown 154.2
1816 Male, age 51, unknown 147.5
2316 Male, age 76, right hemisphere 146.3
2007 Male, age 72, unknown 143.4
1944 Female, age 72, unknown 140.7
2825 Male, age 18, unknown 138.4
2407 Male, age 75, both hemispheres 137.2
2273 Male, age 74, both hemispheres 109.9
2224 Female, age 72, unknown 106.5
Red nucleus
nTPM: 138.8
2588 Male, age 74, left hemisphere 158.2
2503 Female, age 72, unknown 154.9
1904 Male, age 53, unknown 154.8
2785 Male, age 18, unknown 149.9
1954 Female, age 42, unknown 145.5
1865 Male, age 51, unknown 143.5
2769 Male, age 72, unknown 137.4
1821 Female, age 72, unknown 137.3
2227 Male, age 72, unknown 128.0
2584 Male, age 75, left hemisphere 124.9
2823 Male, age 76, right hemisphere 124.7
2725 Female, age 75, unknown 106.3
Substantia nigra
nTPM: 129.6
2241 Male, age 72, unknown 158.6
2699 Male, age 18, unknown 147.9
2409 Female, age 72, unknown 140.2
1851 Male, age 51, unknown 137.3
2583 Male, age 75, right hemisphere 137.0
2665 Male, age 74, both hemispheres 136.2
1889 Female, age 72, unknown 131.8
1916 Female, age 42, unknown 111.0
2590 Female, age 75, unknown 110.3
1941 Male, age 53, unknown 86.1
Superior colliculus
nTPM: 144.6
2664 Male, age 75, both hemispheres 171.8
1895 Male, age 76, right hemisphere 165.0
2668 Female, age 75, unknown 163.5
1796 Male, age 53, unknown 149.8
2587 Male, age 74, left hemisphere 139.9
1913 Female, age 42, unknown 137.0
1839 Male, age 51, unknown 136.0
2087 Female, age 72, unknown 134.0
1995 Male, age 72, unknown 131.8
2261 Male, age 18, unknown 116.9
Ventral tegmental area
nTPM: 128.5
2410 Female, age 72, unknown 143.7
1915 Female, age 42, unknown 133.6
2223 Female, age 72, unknown 131.1
1942 Male, age 51, unknown 129.7
2218 Male, age 76, both hemispheres 120.3
2021 Male, age 53, unknown 112.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 183

Max nTPM: 28.7
Min nTPM: 6.1
Std nTPM: 4.4
Median nTPM: 14.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 28.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 28.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 28.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 25.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 25.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 24.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 22.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 22.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 123.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.3
FF:10158-103A5 76 years, female 123.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.6
Samples: 4

Max nTPM: 69.5
Min nTPM: 43.5
Sample A Female 43.5
Sample B Female 47.5
Sample C Male 53.9
Sample D Male 69.5
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 75.0
Min nTPM: 53.2
Sample A Female 75.0
Sample B Female 56.5
Sample C Male 63.5
Sample D Male 53.2
Periaqueductal gray
nTPM: 59.4
Samples: 3

Max nTPM: 64.0
Min nTPM: 51.2
Sample B Female 64.0
Sample C Male 51.2
Sample D Male 62.9
Superior colliculi
nTPM: 52.7
Samples: 4

Max nTPM: 66.5
Min nTPM: 35.7
Sample A Female 44.8
Sample B Female 35.7
Sample C Male 63.6
Sample D Male 66.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.8
Sample A Male 19.8
Sample B Male 23.5
Sample C Female 24.2
Sample D Female 22.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
74821819 Antisense, RP_060321_02_D08, Mouse strain C57BL/6J (56 days, male) 9.1

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