BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:968.9 nTPM
HPA Brain:965.6 nTPM
GTEx:968.9 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:660.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 965.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 748.8
1830 Male, age 51, unknown 922.1
1833 Male, age 53, unknown 891.9
1870 Female, age 42, unknown 846.9
2666 Male, age 74, left hemisphere 837.6
2019 Male, age 18, unknown 796.5
2828 Female, age 72, unknown 750.0
2411 Female, age 72, unknown 644.1
1827 Male, age 72, unknown 626.8
2219 Male, age 76, both hemispheres 599.4
2586 Male, age 75, left hemisphere 572.3
Dorsal raphe nucleus
nTPM: 586.8
2750 Male, age 76, both hemispheres 733.0
2016 Female, age 72, unknown 705.4
1828 Male, age 53, unknown 600.3
2298 Female, age 72, unknown 463.0
2047 Male, age 72, unknown 432.5
Inferior colliculus
nTPM: 580.6
2849 Male, age 72, unknown 696.7
1890 Male, age 53, unknown 567.6
1848 Female, age 42, unknown 556.2
2097 Female, age 72, unknown 502.0
Median raphe nucleus
nTPM: 707.1
2220 Male, age 76, midline 707.1
Periaquaductal grey, anterior
nTPM: 630.1
2502 Female, age 75, unknown 744.9
1947 Male, age 18, unknown 616.3
1795 Male, age 51, unknown 529.0
Periaquaductal grey, dorsal
nTPM: 576.7
2850 Male, age 76, both hemispheres 808.1
1831 Male, age 72, unknown 563.8
2464 Female, age 72, unknown 541.3
1840 Male, age 53, unknown 393.5
Periaquaductal grey, lateral
nTPM: 619.1
2140 Male, age 76, both hemispheres 656.0
2272 Male, age 74, both hemispheres 638.9
2053 Male, age 18, unknown 562.6
Pretectal area
nTPM: 588.6
2316 Male, age 76, right hemisphere 741.2
1815 Male, age 53, unknown 721.0
1817 Female, age 42, unknown 653.9
2825 Male, age 18, unknown 639.2
2407 Male, age 75, both hemispheres 627.2
2007 Male, age 72, unknown 569.2
2273 Male, age 74, both hemispheres 557.8
2224 Female, age 72, unknown 522.7
2667 Female, age 75, unknown 515.0
1816 Male, age 51, unknown 467.5
1944 Female, age 72, unknown 459.6
Red nucleus
nTPM: 965.6
2503 Female, age 72, unknown 1191.9
2725 Female, age 75, unknown 1112.0
1865 Male, age 51, unknown 1064.7
2823 Male, age 76, right hemisphere 1011.2
1904 Male, age 53, unknown 1009.2
1821 Female, age 72, unknown 992.1
2227 Male, age 72, unknown 977.9
1954 Female, age 42, unknown 950.2
2769 Male, age 72, unknown 918.2
2785 Male, age 18, unknown 868.5
2588 Male, age 74, left hemisphere 816.9
2584 Male, age 75, left hemisphere 674.4
Substantia nigra
nTPM: 591.7
2699 Male, age 18, unknown 800.5
1889 Female, age 72, unknown 632.2
2665 Male, age 74, both hemispheres 617.0
1851 Male, age 51, unknown 608.5
1916 Female, age 42, unknown 581.2
2590 Female, age 75, unknown 553.4
1941 Male, age 53, unknown 550.9
2409 Female, age 72, unknown 539.6
2241 Male, age 72, unknown 527.6
2583 Male, age 75, right hemisphere 506.5
Superior colliculus
nTPM: 665.1
1913 Female, age 42, unknown 995.5
1995 Male, age 72, unknown 955.8
2587 Male, age 74, left hemisphere 699.7
1839 Male, age 51, unknown 699.1
1895 Male, age 76, right hemisphere 633.7
1796 Male, age 53, unknown 611.9
2668 Female, age 75, unknown 556.5
2664 Male, age 75, both hemispheres 513.4
2087 Female, age 72, unknown 496.7
2261 Male, age 18, unknown 488.5
Ventral tegmental area
nTPM: 626.9
2223 Female, age 72, unknown 758.3
2218 Male, age 76, both hemispheres 657.5
1915 Female, age 42, unknown 620.3
2021 Male, age 53, unknown 609.8
1942 Male, age 51, unknown 585.3
2410 Female, age 72, unknown 530.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 968.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 968.9
Samples: 183

Max nTPM: 2407.9
Min nTPM: 302.9
Std nTPM: 343.7
Median nTPM: 904.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 2407.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2133.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1925.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1824.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1813.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1803.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1759.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1713.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1652.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1640.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1618.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.3
FF:10158-103A5 76 years, female 38.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 660.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 660.7
Samples: 3

Max nTPM: 798.7
Min nTPM: 557.4
Sample A Female 798.7
Sample B Female 626.0
Sample C Male 557.4
Midbrain
nTPM: 510.8
Samples: 3

Max nTPM: 700.5
Min nTPM: 385.7
Sample B Female 700.5
Sample C Male 385.7
Sample D Male 446.3
Periaqueductal gray
nTPM: 585.6
Samples: 3

Max nTPM: 602.4
Min nTPM: 563.2
Sample B Female 602.4
Sample C Male 591.2
Sample D Male 563.2
Superior colliculi
nTPM: 658.3
Samples: 4

Max nTPM: 890.5
Min nTPM: 557.3
Sample A Female 890.5
Sample B Female 557.3
Sample C Male 572.7
Sample D Male 612.8

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