PTMA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • PTMA
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN35 EYE3 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT10 LIVER & GALLBLADDER2 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM8 BREAST & FEMALE REPRODUCTIVE SYSTEM7 MUSCLE & VASCULAR TISSUE11 CONNECTIVE & SOFT TISSUE11 SKIN3 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL SPINAL CORD ENTORHINAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD
CORNEA LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (UPPER)
GALLBLADDER LIVER
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS PENIS PROSTATE SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA VAGINA
AORTA BLOOD VESSEL HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE DURA MATER EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:622.2 nTPM
GTEx:817.4 nTPM
FANTOM5:31.0 Scaled Tags Per Million
Pig:530.7 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

622.2
Sample id Sample description nTPM
Putamen
nTPM: 622.2
2647 Male, age 75, left hemisphere 784.2
2489 Female, age 72, unknown 783.0
1829 Male, age 74, unknown 728.4
2482 Female, age 94, left hemisphere 700.4
1937 Female, age 91, right hemisphere 482.8
2466 Female, age 79, unknown 477.7
1838 Male, age 80, right hemisphere 398.8

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

817.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 817.4
Samples: 254

Max nTPM: 1994.3
Min nTPM: 352.9
Std nTPM: 220.5
Median nTPM: 783.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1994.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1547.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1451.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 1449.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1434.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1425.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 1419.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1382.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 1330.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 1303.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1246.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 1230.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1211.1
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 1205.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1202.8
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 1177.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1159.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1151.1
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 1141.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 1139.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1118.3
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 1115.0
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 1114.9
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 1113.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1107.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1078.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1075.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1067.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 1057.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1056.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1051.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1050.8
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 1050.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1049.0
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 1043.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1031.5
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 1025.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1024.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1024.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1011.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1006.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1005.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1005.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 996.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 993.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 992.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 992.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 991.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 987.5
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 984.8
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 970.4
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 967.4
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 967.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 963.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 961.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 956.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 950.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 949.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 944.6
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 932.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 929.9
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 928.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 916.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 912.5
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 912.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 911.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 910.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 902.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 902.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 902.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 898.8
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 898.3
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 896.2
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 893.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 887.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 886.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 884.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 883.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 883.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 881.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 880.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 879.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 873.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 872.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 872.4
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 866.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 864.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 863.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 861.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 853.2
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 852.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 850.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 850.3
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 850.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 844.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 830.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 829.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 828.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 825.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 824.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 824.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 820.0
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 818.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 815.8
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 813.8
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 811.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 811.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 810.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 807.5
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 806.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 805.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 805.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 803.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 803.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 801.7
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 799.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 799.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 798.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 798.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 796.8
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 795.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 795.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 794.5
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 791.7
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 786.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 784.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 784.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 782.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 781.0
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 779.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 779.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 778.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 774.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 773.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 772.5
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 771.2
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 771.0
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 768.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 767.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 764.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 762.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 759.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 759.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 757.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 755.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 751.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 750.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 750.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 749.8
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 749.7
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 749.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 749.2
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 748.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 748.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 748.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 747.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 746.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 741.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 739.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 737.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 734.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 733.8
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 730.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 726.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 724.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 723.2
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 721.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 720.6
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 716.0
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 713.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 707.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 706.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 704.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 703.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 700.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 700.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 698.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 696.0
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 694.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 693.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 691.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 686.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 684.0
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 682.7
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 678.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 678.7
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 677.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 676.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 676.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 675.4
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 673.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 669.4
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 664.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 663.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 661.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 658.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 656.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 653.2
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 649.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 648.7
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 648.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 646.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 643.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 643.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 640.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 639.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 638.9
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 637.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 636.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 634.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 630.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 628.4
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 626.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 622.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 620.5
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 618.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 617.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 615.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 615.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 613.4
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 612.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 610.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 610.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 607.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 605.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 601.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 601.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 600.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 596.3
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 595.5
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 588.8
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 574.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 572.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 558.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 550.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 549.6
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 547.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 539.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 536.3
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 533.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 529.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 528.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 524.9
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 521.5
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 512.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 510.7
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 506.4
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 449.9
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 446.6
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 425.9
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 422.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 405.0
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 386.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 352.9
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 31.0
FF:10176-103C5 60 years, female 31.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

530.7
Pig sample Sample description nTPM
Putamen
nTPM: 530.7
Samples: 3

Max nTPM: 574.6
Min nTPM: 459.7
Sample B Female 459.7
Sample C Male 574.6
Sample D Male 557.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.