MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA Brain:46.9 nTPM
GTEx:17.7 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:7.3 nTPM
Allen mouse:7.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
1830 Male, age 51, unknown 50.9
1833 Male, age 53, unknown 50.6
2666 Male, age 74, left hemisphere 48.4
2019 Male, age 18, unknown 43.8
2828 Female, age 72, unknown 43.6
1827 Male, age 72, unknown 42.4
1870 Female, age 42, unknown 40.9
2411 Female, age 72, unknown 39.9
2219 Male, age 76, both hemispheres 39.2
2586 Male, age 75, left hemisphere 38.0
Dorsal raphe nucleus
nTPM: 42.6
2750 Male, age 76, both hemispheres 46.1
2016 Female, age 72, unknown 44.0
2047 Male, age 72, unknown 43.1
1828 Male, age 53, unknown 42.2
2298 Female, age 72, unknown 37.6
Inferior colliculus
nTPM: 45.6
2097 Female, age 72, unknown 47.7
2849 Male, age 72, unknown 45.5
1848 Female, age 42, unknown 44.8
1890 Male, age 53, unknown 44.5
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Periaquaductal grey, anterior
nTPM: 44.2
1947 Male, age 18, unknown 51.8
2502 Female, age 75, unknown 41.2
1795 Male, age 51, unknown 39.5
Periaquaductal grey, dorsal
nTPM: 44.9
1831 Male, age 72, unknown 48.3
2850 Male, age 76, both hemispheres 45.5
2464 Female, age 72, unknown 44.1
1840 Male, age 53, unknown 41.8
Periaquaductal grey, lateral
nTPM: 44.3
2140 Male, age 76, both hemispheres 46.2
2272 Male, age 74, both hemispheres 43.7
2053 Male, age 18, unknown 43.0
Pretectal area
nTPM: 44.1
2316 Male, age 76, right hemisphere 50.6
2273 Male, age 74, both hemispheres 47.2
2407 Male, age 75, both hemispheres 47.2
2667 Female, age 75, unknown 46.6
2825 Male, age 18, unknown 45.5
2224 Female, age 72, unknown 44.8
2007 Male, age 72, unknown 42.1
1944 Female, age 72, unknown 41.3
1815 Male, age 53, unknown 40.4
1816 Male, age 51, unknown 40.1
1817 Female, age 42, unknown 39.5
Red nucleus
nTPM: 46.9
2823 Male, age 76, right hemisphere 58.6
1865 Male, age 51, unknown 48.5
1954 Female, age 42, unknown 48.4
1904 Male, age 53, unknown 46.8
2588 Male, age 74, left hemisphere 46.6
2584 Male, age 75, left hemisphere 45.8
2725 Female, age 75, unknown 45.8
2227 Male, age 72, unknown 45.5
2503 Female, age 72, unknown 45.5
2785 Male, age 18, unknown 44.5
2769 Male, age 72, unknown 44.3
1821 Female, age 72, unknown 42.6
Substantia nigra
nTPM: 45.5
2241 Male, age 72, unknown 50.2
1941 Male, age 53, unknown 49.9
2583 Male, age 75, right hemisphere 47.7
2665 Male, age 74, both hemispheres 46.4
2409 Female, age 72, unknown 45.9
2699 Male, age 18, unknown 45.0
1916 Female, age 42, unknown 43.7
2590 Female, age 75, unknown 43.7
1889 Female, age 72, unknown 41.3
1851 Male, age 51, unknown 41.2
Superior colliculus
nTPM: 44.2
1895 Male, age 76, right hemisphere 49.0
2668 Female, age 75, unknown 47.1
1839 Male, age 51, unknown 46.6
2087 Female, age 72, unknown 46.3
1913 Female, age 42, unknown 44.9
2587 Male, age 74, left hemisphere 44.4
1995 Male, age 72, unknown 42.7
1796 Male, age 53, unknown 41.1
2664 Male, age 75, both hemispheres 41.1
2261 Male, age 18, unknown 39.1
Ventral tegmental area
nTPM: 42.8
2223 Female, age 72, unknown 44.7
1942 Male, age 51, unknown 44.6
2021 Male, age 53, unknown 43.4
2218 Male, age 76, both hemispheres 42.0
2410 Female, age 72, unknown 41.3
1915 Female, age 42, unknown 40.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.7
Samples: 183

Max nTPM: 27.6
Min nTPM: 11.8
Std nTPM: 2.8
Median nTPM: 17.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 27.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 27.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 25.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 25.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 24.2
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 24.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 23.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 22.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 22.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.8
FF:10158-103A5 76 years, female 71.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.6
Sample A Female 22.3
Sample B Female 17.6
Sample C Male 18.5
Sample D Male 17.8
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.1
Sample A Female 21.8
Sample B Female 18.9
Sample C Male 16.1
Sample D Male 18.3
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 16.9
Min nTPM: 14.8
Sample B Female 16.3
Sample C Male 16.9
Sample D Male 14.8
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.3
Sample A Female 21.0
Sample B Female 16.3
Sample C Male 17.2
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 7.6
Min nTPM: 7.1
Sample A Male 7.4
Sample B Male 7.2
Sample C Female 7.1
Sample D Female 7.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
69873499 Antisense, RP_050512_01_D07, Mouse strain C57BL/6J (56 days, male) 7.2

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