A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.2
nTPM
Monaco:
15.9
nTPM
Schmiedel:
50.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.2
HPA sample
nTPM
NK-cell nTPM: 5.3
Samples: 6
Max nTPM: 11.3
Min nTPM: 2.4
P10809_1013
2.4
P10809_1033
7.3
P10809_1052
4.0
P10809_1071
3.2
P10809_1093
11.3
P10809_1103
3.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
Monaco sample
nTPM
NK-cell nTPM: 16.0
Samples: 4
Max nTPM: 20.3
Min nTPM: 12.9
RHH5316_R3683
15.7
RHH5224_R3596
12.9
RHH5253_R3625
14.9
RHH5282_R3654
20.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.0
Schmiedel sample id
TPM
NK-cell TPM: 50.0
Samples: 90
Max TPM: 74.8
Min TPM: 27.4
NK_1
74.8
NK_2
73.6
NK_3
73.3
NK_4
73.3
NK_5
66.7
NK_6
64.9
NK_7
64.5
NK_8
63.5
NK_9
63.4
NK_10
62.8
NK_11
62.7
NK_12
62.3
NK_13
62.1
NK_14
61.9
NK_15
61.7
NK_16
60.6
NK_17
59.9
NK_18
59.8
NK_19
59.8
NK_20
59.7
NK_21
58.8
NK_22
58.1
NK_23
57.4
NK_24
56.9
NK_25
56.9
NK_26
56.7
NK_27
56.6
NK_28
56.2
NK_29
56.0
NK_30
55.5
NK_31
55.5
NK_32
55.1
NK_33
55.1
NK_34
55.0
NK_35
54.8
NK_36
54.8
NK_37
54.5
NK_38
54.5
NK_39
53.3
NK_40
52.3
NK_41
52.0
NK_42
51.9
NK_43
51.7
NK_44
51.5
NK_45
51.1
NK_46
51.0
NK_47
50.6
NK_48
49.1
NK_49
48.4
NK_50
48.2
NK_51
47.8
NK_52
47.7
NK_53
47.4
NK_54
47.3
NK_55
47.1
NK_56
45.7
NK_57
45.4
NK_58
45.3
NK_59
45.1
NK_60
45.0
NK_61
44.9
NK_62
44.5
NK_63
44.2
NK_64
44.1
NK_65
43.4
NK_66
43.1
NK_67
41.5
NK_68
41.4
NK_69
41.0
NK_70
40.7
NK_71
40.3
NK_72
40.2
NK_73
40.0
NK_74
39.8
NK_75
39.5
NK_76
38.7
NK_77
38.5
NK_78
37.7
NK_79
37.6
NK_80
37.1
NK_81
36.9
NK_82
34.7
NK_83
33.0
NK_84
32.4
NK_85
31.3
NK_86
30.1
NK_87
28.9
NK_88
28.0
NK_89
27.8
NK_90
27.4
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