A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.5
nTPM
Monaco:
12.4
nTPM
Schmiedel:
25.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.5
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.5
P10809_1003
1.5
P10809_1020
0.5
P10809_1039
0.9
P10809_1058
1.1
P10809_1080
0.9
P10809_1107
1.9
Intermediate monocyte nTPM: 2.5
Samples: 6
Max nTPM: 3.4
Min nTPM: 0.8
P10809_1004
3.4
P10809_1023
3.4
P10809_1042
0.8
P10809_1061
2.9
P10809_1081
2.3
P10809_1108
2.3
Non-classical monocyte nTPM: 2.5
Samples: 5
Max nTPM: 3.9
Min nTPM: 0.2
P10809_1005
3.9
P10809_1053
2.2
P10809_1072
0.2
P10809_1082
3.6
P10809_1109
2.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Monaco sample
nTPM
Classical monocyte nTPM: 4.3
Samples: 4
Max nTPM: 5.9
Min nTPM: 2.7
RHH5313_R3680
4.8
RHH5221_R3593
5.9
RHH5250_R3622
3.9
RHH5279_R3651
2.7
Intermediate monocyte nTPM: 9.6
Samples: 4
Max nTPM: 13.7
Min nTPM: 6.9
RHH5314_R3681
6.9
RHH5222_R3594
7.1
RHH5251_R3623
13.7
RHH5280_R3652
10.6
Non-classical monocyte nTPM: 12.4
Samples: 4
Max nTPM: 15.9
Min nTPM: 10.4
RHH5315_R3682
10.6
RHH5223_R3595
10.4
RHH5252_R3624
15.9
RHH5281_R3653
12.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.1
Schmiedel sample id
TPM
Classical monocyte TPM: 6.7
Samples: 91
Max TPM: 9.7
Min TPM: 4.1
MONOCYTES_1
9.7
MONOCYTES_2
9.6
MONOCYTES_3
9.5
MONOCYTES_4
9.0
MONOCYTES_5
8.9
MONOCYTES_6
8.6
MONOCYTES_7
8.5
MONOCYTES_8
8.4
MONOCYTES_9
8.3
MONOCYTES_10
8.1
MONOCYTES_11
8.0
MONOCYTES_12
7.9
MONOCYTES_13
7.9
MONOCYTES_14
7.9
MONOCYTES_15
7.8
MONOCYTES_16
7.8
MONOCYTES_17
7.7
MONOCYTES_18
7.7
MONOCYTES_19
7.7
MONOCYTES_20
7.7
MONOCYTES_21
7.6
MONOCYTES_22
7.6
MONOCYTES_23
7.6
MONOCYTES_24
7.5
MONOCYTES_25
7.5
MONOCYTES_26
7.5
MONOCYTES_27
7.4
MONOCYTES_28
7.4
MONOCYTES_29
7.4
MONOCYTES_30
7.3
MONOCYTES_31
7.3
MONOCYTES_32
7.3
MONOCYTES_33
7.2
MONOCYTES_34
7.2
MONOCYTES_35
7.2
MONOCYTES_36
7.2
MONOCYTES_37
7.1
MONOCYTES_38
7.1
MONOCYTES_39
7.1
MONOCYTES_40
7.0
MONOCYTES_41
7.0
MONOCYTES_42
7.0
MONOCYTES_43
6.9
MONOCYTES_44
6.8
MONOCYTES_45
6.8
MONOCYTES_46
6.6
MONOCYTES_47
6.6
MONOCYTES_48
6.6
MONOCYTES_49
6.6
MONOCYTES_50
6.5
MONOCYTES_51
6.5
MONOCYTES_52
6.5
MONOCYTES_53
6.5
MONOCYTES_54
6.5
MONOCYTES_55
6.4
MONOCYTES_56
6.4
MONOCYTES_57
6.4
MONOCYTES_58
6.4
MONOCYTES_59
6.3
MONOCYTES_60
6.3
MONOCYTES_61
6.2
MONOCYTES_62
6.2
MONOCYTES_63
6.1
MONOCYTES_64
6.0
MONOCYTES_65
6.0
MONOCYTES_66
6.0
MONOCYTES_67
5.8
MONOCYTES_68
5.8
MONOCYTES_69
5.8
MONOCYTES_70
5.7
MONOCYTES_71
5.7
MONOCYTES_72
5.7
MONOCYTES_73
5.6
MONOCYTES_74
5.6
MONOCYTES_75
5.4
MONOCYTES_76
5.4
MONOCYTES_77
5.3
MONOCYTES_78
5.3
MONOCYTES_79
5.3
MONOCYTES_80
5.2
MONOCYTES_81
5.1
MONOCYTES_82
5.1
MONOCYTES_83
5.1
MONOCYTES_84
5.0
MONOCYTES_85
5.0
MONOCYTES_86
5.0
MONOCYTES_87
4.8
MONOCYTES_88
4.6
MONOCYTES_89
4.5
MONOCYTES_90
4.4
MONOCYTES_91
4.1
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Non-classical monocyte TPM: 25.1
Samples: 90
Max TPM: 34.0
Min TPM: 11.9
M2_1
34.0
M2_2
33.3
M2_3
32.4
M2_4
32.3
M2_5
32.1
M2_6
31.7
M2_7
31.3
M2_8
31.2
M2_9
30.6
M2_10
30.4
M2_11
30.2
M2_12
29.9
M2_13
29.7
M2_14
29.4
M2_15
29.4
M2_16
29.3
M2_17
29.1
M2_18
29.0
M2_19
29.0
M2_20
28.9
M2_21
28.9
M2_22
28.8
M2_23
28.8
M2_24
28.8
M2_25
28.8
M2_26
28.8
M2_27
28.6
M2_28
28.5
M2_29
28.5
M2_30
28.5
M2_31
28.2
M2_32
28.2
M2_33
28.0
M2_34
27.9
M2_35
27.6
M2_36
27.3
M2_37
26.8
M2_38
26.6
M2_39
26.4
M2_40
26.4
M2_41
26.3
M2_42
26.2
M2_43
26.1
M2_44
26.0
M2_45
25.9
M2_46
25.7
M2_47
25.7
M2_48
25.6
M2_49
25.5
M2_50
25.4
M2_51
25.4
M2_52
24.9
M2_53
24.9
M2_54
24.8
M2_55
24.5
M2_56
24.2
M2_57
23.6
M2_58
23.6
M2_59
23.6
M2_60
23.5
M2_61
23.5
M2_62
23.1
M2_63
23.0
M2_64
22.9
M2_65
22.9
M2_66
22.7
M2_67
22.2
M2_68
22.0
M2_69
21.4
M2_70
21.0
M2_71
20.9
M2_72
20.9
M2_73
20.6
M2_74
20.6
M2_75
19.8
M2_76
19.3
M2_77
19.3
M2_78
19.2
M2_79
19.2
M2_80
18.7
M2_81
18.7
M2_82
18.4
M2_83
18.1
M2_84
17.0
M2_85
16.7
M2_86
16.4
M2_87
16.0
M2_88
15.7
M2_89
13.4
M2_90
11.9
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