MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.8 nTPM
HPA Brain:50.7 nTPM
GTEx:18.8 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:104.4 nTPM
Mouse:91.8 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.4
1827 Male, age 72, unknown 47.8
2411 Female, age 72, unknown 44.7
1870 Female, age 42, unknown 43.7
1833 Male, age 53, unknown 42.8
2828 Female, age 72, unknown 41.4
2219 Male, age 76, both hemispheres 41.2
2586 Male, age 75, left hemisphere 39.8
1830 Male, age 51, unknown 38.4
2666 Male, age 74, left hemisphere 38.1
2019 Male, age 18, unknown 36.2
Dorsal raphe nucleus
nTPM: 44.8
2298 Female, age 72, unknown 54.6
2750 Male, age 76, both hemispheres 47.5
2047 Male, age 72, unknown 45.8
1828 Male, age 53, unknown 38.4
2016 Female, age 72, unknown 37.8
Inferior colliculus
nTPM: 45.8
2097 Female, age 72, unknown 52.4
2849 Male, age 72, unknown 46.1
1848 Female, age 42, unknown 44.8
1890 Male, age 53, unknown 39.8
Median raphe nucleus
nTPM: 50.7
2220 Male, age 76, midline 50.7
Periaquaductal grey, anterior
nTPM: 46.6
1947 Male, age 18, unknown 48.4
1795 Male, age 51, unknown 46.2
2502 Female, age 75, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 43.2
1840 Male, age 53, unknown 46.9
1831 Male, age 72, unknown 43.7
2850 Male, age 76, both hemispheres 43.1
2464 Female, age 72, unknown 39.2
Periaquaductal grey, lateral
nTPM: 43.3
2272 Male, age 74, both hemispheres 46.7
2053 Male, age 18, unknown 44.3
2140 Male, age 76, both hemispheres 38.9
Pretectal area
nTPM: 47.5
2224 Female, age 72, unknown 52.9
1816 Male, age 51, unknown 52.2
2273 Male, age 74, both hemispheres 48.9
2007 Male, age 72, unknown 48.7
1817 Female, age 42, unknown 48.4
1944 Female, age 72, unknown 48.3
2667 Female, age 75, unknown 46.8
1815 Male, age 53, unknown 46.4
2407 Male, age 75, both hemispheres 45.0
2825 Male, age 18, unknown 44.4
2316 Male, age 76, right hemisphere 40.0
Red nucleus
nTPM: 37.2
2725 Female, age 75, unknown 42.1
1821 Female, age 72, unknown 41.4
2584 Male, age 75, left hemisphere 39.6
2785 Male, age 18, unknown 39.5
2823 Male, age 76, right hemisphere 38.2
1954 Female, age 42, unknown 37.7
1904 Male, age 53, unknown 36.5
2769 Male, age 72, unknown 36.2
2227 Male, age 72, unknown 35.6
2503 Female, age 72, unknown 35.6
1865 Male, age 51, unknown 34.7
2588 Male, age 74, left hemisphere 29.5
Substantia nigra
nTPM: 42.9
1916 Female, age 42, unknown 50.8
1941 Male, age 53, unknown 48.3
1889 Female, age 72, unknown 47.1
1851 Male, age 51, unknown 45.1
2241 Male, age 72, unknown 45.0
2583 Male, age 75, right hemisphere 42.2
2699 Male, age 18, unknown 40.1
2409 Female, age 72, unknown 38.8
2590 Female, age 75, unknown 36.6
2665 Male, age 74, both hemispheres 35.4
Superior colliculus
nTPM: 43.4
1796 Male, age 53, unknown 49.2
2261 Male, age 18, unknown 49.1
2668 Female, age 75, unknown 46.2
2087 Female, age 72, unknown 45.2
1839 Male, age 51, unknown 44.8
2664 Male, age 75, both hemispheres 42.9
1895 Male, age 76, right hemisphere 42.2
1913 Female, age 42, unknown 39.9
2587 Male, age 74, left hemisphere 39.8
1995 Male, age 72, unknown 34.6
Ventral tegmental area
nTPM: 44.6
2218 Male, age 76, both hemispheres 48.6
2410 Female, age 72, unknown 45.4
1915 Female, age 42, unknown 44.4
2223 Female, age 72, unknown 44.2
1942 Male, age 51, unknown 42.7
2021 Male, age 53, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.8
Samples: 183

Max nTPM: 40.2
Min nTPM: 8.8
Std nTPM: 5.4
Median nTPM: 17.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 40.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 36.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 35.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 35.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 32.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 30.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 29.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 28.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.3
Samples: 4

Max nTPM: 105.6
Min nTPM: 71.8
Sample A Female 105.6
Sample B Female 75.1
Sample C Male 100.8
Sample D Male 71.8
Midbrain
nTPM: 104.5
Samples: 4

Max nTPM: 115.4
Min nTPM: 80.2
Sample A Female 107.5
Sample B Female 80.2
Sample C Male 114.7
Sample D Male 115.4
Periaqueductal gray
nTPM: 84.4
Samples: 3

Max nTPM: 94.8
Min nTPM: 78.2
Sample B Female 80.2
Sample C Male 94.8
Sample D Male 78.2
Superior colliculi
nTPM: 102.4
Samples: 4

Max nTPM: 117.1
Min nTPM: 88.9
Sample A Female 117.1
Sample B Female 88.9
Sample C Male 99.2
Sample D Male 104.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.8
Samples: 4

Max nTPM: 95.4
Min nTPM: 89.5
Sample A Male 91.9
Sample B Male 95.4
Sample C Female 90.3
Sample D Female 89.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
76003322 Antisense, RP_060608_02_B01, Mouse strain C57BL/6J (56 days, male) 0.4

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