MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:165.2 nTPM
HPA Brain:360.3 nTPM
GTEx:165.2 nTPM
FANTOM5:139.1 Scaled Tags Per Million
Pig:264.8 nTPM
Mouse:424.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 360.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.6
1827 Male, age 72, unknown 190.7
2019 Male, age 18, unknown 173.5
2411 Female, age 72, unknown 172.7
1870 Female, age 42, unknown 158.9
2828 Female, age 72, unknown 156.8
2219 Male, age 76, both hemispheres 147.2
2586 Male, age 75, left hemisphere 141.9
1833 Male, age 53, unknown 129.8
1830 Male, age 51, unknown 119.5
2666 Male, age 74, left hemisphere 95.0
Dorsal raphe nucleus
nTPM: 245.7
2298 Female, age 72, unknown 420.9
2047 Male, age 72, unknown 219.2
2016 Female, age 72, unknown 217.2
1828 Male, age 53, unknown 204.8
2750 Male, age 76, both hemispheres 166.1
Inferior colliculus
nTPM: 134.3
2849 Male, age 72, unknown 152.3
2097 Female, age 72, unknown 146.6
1848 Female, age 42, unknown 129.0
1890 Male, age 53, unknown 109.3
Median raphe nucleus
nTPM: 217.6
2220 Male, age 76, midline 217.6
Periaquaductal grey, anterior
nTPM: 240.2
1795 Male, age 51, unknown 298.5
1947 Male, age 18, unknown 236.4
2502 Female, age 75, unknown 185.6
Periaquaductal grey, dorsal
nTPM: 195.0
2850 Male, age 76, both hemispheres 241.2
1840 Male, age 53, unknown 234.1
2464 Female, age 72, unknown 165.1
1831 Male, age 72, unknown 139.6
Periaquaductal grey, lateral
nTPM: 360.3
2272 Male, age 74, both hemispheres 689.7
2140 Male, age 76, both hemispheres 233.1
2053 Male, age 18, unknown 158.0
Pretectal area
nTPM: 227.9
2273 Male, age 74, both hemispheres 599.9
2224 Female, age 72, unknown 286.2
2667 Female, age 75, unknown 222.8
1816 Male, age 51, unknown 201.1
2825 Male, age 18, unknown 199.6
2007 Male, age 72, unknown 198.8
1944 Female, age 72, unknown 191.6
2407 Male, age 75, both hemispheres 163.4
1815 Male, age 53, unknown 162.3
1817 Female, age 42, unknown 156.3
2316 Male, age 76, right hemisphere 124.8
Red nucleus
nTPM: 129.2
2785 Male, age 18, unknown 168.3
1954 Female, age 42, unknown 157.4
2725 Female, age 75, unknown 157.4
1821 Female, age 72, unknown 145.1
2227 Male, age 72, unknown 135.8
2769 Male, age 72, unknown 135.6
1904 Male, age 53, unknown 123.6
1865 Male, age 51, unknown 118.3
2503 Female, age 72, unknown 114.1
2823 Male, age 76, right hemisphere 109.5
2584 Male, age 75, left hemisphere 92.6
2588 Male, age 74, left hemisphere 92.2
Substantia nigra
nTPM: 177.3
1916 Female, age 42, unknown 264.0
1941 Male, age 53, unknown 235.6
1851 Male, age 51, unknown 205.4
2241 Male, age 72, unknown 184.3
1889 Female, age 72, unknown 176.5
2590 Female, age 75, unknown 167.1
2699 Male, age 18, unknown 160.7
2409 Female, age 72, unknown 143.2
2665 Male, age 74, both hemispheres 130.5
2583 Male, age 75, right hemisphere 106.1
Superior colliculus
nTPM: 163.4
2587 Male, age 74, left hemisphere 215.4
2261 Male, age 18, unknown 209.0
1796 Male, age 53, unknown 199.5
2087 Female, age 72, unknown 172.4
2664 Male, age 75, both hemispheres 166.3
2668 Female, age 75, unknown 156.4
1839 Male, age 51, unknown 147.4
1995 Male, age 72, unknown 131.2
1895 Male, age 76, right hemisphere 119.5
1913 Female, age 42, unknown 116.6
Ventral tegmental area
nTPM: 176.8
1915 Female, age 42, unknown 198.9
2410 Female, age 72, unknown 190.3
2218 Male, age 76, both hemispheres 187.0
2021 Male, age 53, unknown 169.8
1942 Male, age 51, unknown 169.7
2223 Female, age 72, unknown 145.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 165.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.2
Samples: 183

Max nTPM: 528.0
Min nTPM: 50.2
Std nTPM: 75.9
Median nTPM: 152.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 528.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 424.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 395.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 386.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 331.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 319.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 314.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 313.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 309.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 308.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 300.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.1
FF:10158-103A5 76 years, female 139.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 264.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 213.4
Samples: 4

Max nTPM: 348.4
Min nTPM: 113.0
Sample A Female 348.4
Sample B Female 142.8
Sample C Male 249.4
Sample D Male 113.0
Midbrain
nTPM: 189.5
Samples: 4

Max nTPM: 222.6
Min nTPM: 173.3
Sample A Female 173.3
Sample B Female 187.7
Sample C Male 222.6
Sample D Male 174.5
Periaqueductal gray
nTPM: 264.7
Samples: 3

Max nTPM: 331.2
Min nTPM: 220.9
Sample B Female 220.9
Sample C Male 331.2
Sample D Male 242.1
Superior colliculi
nTPM: 192.2
Samples: 4

Max nTPM: 230.1
Min nTPM: 149.8
Sample A Female 230.1
Sample B Female 149.8
Sample C Male 213.4
Sample D Male 175.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 424.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 424.2
Samples: 4

Max nTPM: 447.2
Min nTPM: 388.4
Sample A Male 432.8
Sample B Male 428.3
Sample C Female 388.4
Sample D Female 447.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo