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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SUMO2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:182.3 nTPM
FANTOM5:158.3 Scaled Tags Per Million
Pig:214.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA042123Antibody HPA048064Antibody CAB037314
Glial cells LowNot detectedNot detected
Neuronal cells HighNot detectedLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 182.3
Samples: 300

Max nTPM: 392.8
Min nTPM: 94.8
Std nTPM: 35.7
Median nTPM: 178.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 392.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 334.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 316.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 307.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 306.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 289.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 288.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 254.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 249.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 246.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 245.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 245.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 245.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 245.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 244.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 235.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 234.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 231.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 231.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 230.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 228.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 226.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 225.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 225.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 225.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 225.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 224.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 223.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 223.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 221.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 220.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 220.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 219.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 219.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 219.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 218.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 217.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 217.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 215.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 214.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 213.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 212.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 212.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 211.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 211.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 211.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 210.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 210.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 209.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 209.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 209.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 208.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 208.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 208.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 208.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 208.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 207.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 206.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 205.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 205.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 204.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 204.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 204.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 203.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 203.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 202.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 202.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 202.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 201.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 201.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 201.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 201.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 200.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 200.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 200.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 199.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 198.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 198.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 198.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 197.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 197.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 197.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 197.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 196.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 196.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 195.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 195.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 195.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 194.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 193.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 193.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 193.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 192.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 191.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 191.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 191.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 190.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 190.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 190.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 190.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 190.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 190.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 189.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 189.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 189.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 189.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 188.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 188.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 188.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 188.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 187.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 187.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 187.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 186.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 185.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 185.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 185.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 185.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 185.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 184.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 184.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 184.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 184.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 184.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 183.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 183.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 183.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 183.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 183.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 183.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 182.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 182.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 182.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 182.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 182.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 182.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 182.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 181.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 181.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 181.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 181.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 181.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 181.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 180.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 180.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 180.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 179.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 179.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 179.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 178.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 178.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 178.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 178.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 177.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 176.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 176.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 176.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 176.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 176.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 176.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 175.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 175.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 175.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 175.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 175.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 174.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 174.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 173.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 173.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 173.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 173.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 173.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 173.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 173.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 173.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 173.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 172.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 172.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 172.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 172.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 172.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 172.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 172.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 171.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 171.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 171.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 171.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 171.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 171.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 171.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 171.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 171.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 170.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 170.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 170.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 169.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 169.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 169.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 168.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 168.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 167.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 167.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 166.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 166.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 166.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 166.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 166.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 166.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 166.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 165.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 165.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 165.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 164.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 164.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 164.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 164.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 164.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 164.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 164.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 164.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 163.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 163.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 162.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 162.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 162.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 162.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 161.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 161.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 161.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 160.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 160.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 160.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 159.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 159.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 159.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 159.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 158.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 157.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 157.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 157.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 157.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 157.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 156.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 156.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 156.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 156.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 156.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 155.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 155.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 155.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 155.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 154.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 153.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 153.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 152.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 152.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 150.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 149.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 149.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 149.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 148.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 147.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 147.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 147.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 146.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 146.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 145.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 145.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 143.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 142.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 141.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 141.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 140.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 140.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 140.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 139.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 139.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 136.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 136.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 136.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 135.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 134.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 134.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 132.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 132.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 131.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 130.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 130.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 129.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 127.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 124.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 123.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 119.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 119.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 118.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 117.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 109.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 109.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 106.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 94.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

158.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 158.3
FF:10164-103B2 76 years, female 158.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.9
Pig sample Sample description nTPM
Caudate
nTPM: 215.0
Samples: 4

Max nTPM: 234.7
Min nTPM: 193.6
Sample A Female 234.7
Sample B Female 193.6
Sample C Male 229.9
Sample D Male 201.6

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