MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:195.3 nTPM
HPA Brain:127.3 nTPM
GTEx:195.3 nTPM
FANTOM5:73.9 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:63.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 127.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.4
2828 Female, age 72, unknown 140.6
1870 Female, age 42, unknown 121.9
1827 Male, age 72, unknown 113.5
2411 Female, age 72, unknown 112.4
2586 Male, age 75, left hemisphere 111.2
1833 Male, age 53, unknown 108.2
2666 Male, age 74, left hemisphere 101.2
1830 Male, age 51, unknown 93.9
2219 Male, age 76, both hemispheres 84.7
2019 Male, age 18, unknown 76.6
Dorsal raphe nucleus
nTPM: 124.7
2047 Male, age 72, unknown 132.6
2016 Female, age 72, unknown 129.3
2298 Female, age 72, unknown 129.0
2750 Male, age 76, both hemispheres 119.5
1828 Male, age 53, unknown 112.9
Inferior colliculus
nTPM: 97.3
1848 Female, age 42, unknown 103.5
1890 Male, age 53, unknown 99.0
2849 Male, age 72, unknown 95.3
2097 Female, age 72, unknown 91.4
Median raphe nucleus
nTPM: 111.9
2220 Male, age 76, midline 111.9
Periaquaductal grey, anterior
nTPM: 106.0
1947 Male, age 18, unknown 113.7
2502 Female, age 75, unknown 104.8
1795 Male, age 51, unknown 99.6
Periaquaductal grey, dorsal
nTPM: 101.1
1840 Male, age 53, unknown 125.1
2850 Male, age 76, both hemispheres 100.8
2464 Female, age 72, unknown 92.3
1831 Male, age 72, unknown 86.5
Periaquaductal grey, lateral
nTPM: 105.4
2053 Male, age 18, unknown 124.5
2140 Male, age 76, both hemispheres 118.8
2272 Male, age 74, both hemispheres 72.9
Pretectal area
nTPM: 104.2
2316 Male, age 76, right hemisphere 139.3
2825 Male, age 18, unknown 128.8
2667 Female, age 75, unknown 125.5
1815 Male, age 53, unknown 117.9
1817 Female, age 42, unknown 108.6
2224 Female, age 72, unknown 104.7
1944 Female, age 72, unknown 99.2
1816 Male, age 51, unknown 90.7
2273 Male, age 74, both hemispheres 88.3
2007 Male, age 72, unknown 78.0
2407 Male, age 75, both hemispheres 65.2
Red nucleus
nTPM: 127.3
2503 Female, age 72, unknown 160.0
1904 Male, age 53, unknown 147.7
1821 Female, age 72, unknown 147.2
2823 Male, age 76, right hemisphere 138.5
2769 Male, age 72, unknown 138.0
2227 Male, age 72, unknown 135.3
1954 Female, age 42, unknown 134.8
1865 Male, age 51, unknown 133.0
2588 Male, age 74, left hemisphere 112.1
2725 Female, age 75, unknown 101.0
2584 Male, age 75, left hemisphere 98.4
2785 Male, age 18, unknown 81.6
Substantia nigra
nTPM: 125.2
2699 Male, age 18, unknown 180.4
1916 Female, age 42, unknown 154.2
1851 Male, age 51, unknown 144.3
2241 Male, age 72, unknown 138.3
2665 Male, age 74, both hemispheres 123.9
2409 Female, age 72, unknown 120.0
2590 Female, age 75, unknown 109.5
1889 Female, age 72, unknown 108.7
2583 Male, age 75, right hemisphere 87.7
1941 Male, age 53, unknown 84.5
Superior colliculus
nTPM: 101.9
2668 Female, age 75, unknown 115.0
1796 Male, age 53, unknown 107.0
1913 Female, age 42, unknown 106.7
1839 Male, age 51, unknown 106.3
1895 Male, age 76, right hemisphere 103.0
2587 Male, age 74, left hemisphere 102.6
1995 Male, age 72, unknown 100.4
2087 Female, age 72, unknown 97.0
2664 Male, age 75, both hemispheres 93.5
2261 Male, age 18, unknown 87.5
Ventral tegmental area
nTPM: 115.0
1915 Female, age 42, unknown 134.4
2223 Female, age 72, unknown 124.7
1942 Male, age 51, unknown 116.0
2410 Female, age 72, unknown 111.8
2218 Male, age 76, both hemispheres 106.6
2021 Male, age 53, unknown 96.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 195.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 195.3
Samples: 183

Max nTPM: 545.4
Min nTPM: 48.7
Std nTPM: 79.7
Median nTPM: 184.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 545.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 430.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 419.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 416.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 414.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 386.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 377.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 373.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 372.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 369.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 335.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 73.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.9
FF:10158-103A5 76 years, female 73.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.8
Samples: 4

Max nTPM: 38.2
Min nTPM: 22.3
Sample A Female 38.2
Sample B Female 28.3
Sample C Male 22.3
Sample D Male 30.3
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 52.0
Min nTPM: 13.9
Sample A Female 52.0
Sample B Female 34.6
Sample C Male 16.6
Sample D Male 13.9
Periaqueductal gray
nTPM: 29.8
Samples: 3

Max nTPM: 32.4
Min nTPM: 27.1
Sample B Female 32.4
Sample C Male 29.8
Sample D Male 27.1
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 25.7
Min nTPM: 18.3
Sample A Female 25.7
Sample B Female 18.3
Sample C Male 18.6
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 63.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.3
Samples: 4

Max nTPM: 68.1
Min nTPM: 59.6
Sample A Male 68.1
Sample B Male 65.8
Sample C Female 59.8
Sample D Female 59.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71735833 Antisense, RP_051010_03_C07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo