MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:266.9 nTPM
HPA Brain:266.5 nTPM
GTEx:266.9 nTPM
FANTOM5:862.5 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:0.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 266.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.3
1870 Female, age 42, unknown 112.0
2586 Male, age 75, left hemisphere 100.7
2828 Female, age 72, unknown 94.7
2666 Male, age 74, left hemisphere 89.1
1830 Male, age 51, unknown 61.8
1827 Male, age 72, unknown 56.7
1833 Male, age 53, unknown 55.4
2411 Female, age 72, unknown 42.5
2019 Male, age 18, unknown 36.3
2219 Male, age 76, both hemispheres 23.6
Dorsal raphe nucleus
nTPM: 120.6
2047 Male, age 72, unknown 157.3
2016 Female, age 72, unknown 153.5
1828 Male, age 53, unknown 126.6
2298 Female, age 72, unknown 104.8
2750 Male, age 76, both hemispheres 60.7
Inferior colliculus
nTPM: 55.0
2097 Female, age 72, unknown 78.9
2849 Male, age 72, unknown 51.0
1848 Female, age 42, unknown 50.1
1890 Male, age 53, unknown 39.9
Median raphe nucleus
nTPM: 77.1
2220 Male, age 76, midline 77.1
Periaquaductal grey, anterior
nTPM: 127.6
1795 Male, age 51, unknown 259.0
2502 Female, age 75, unknown 64.9
1947 Male, age 18, unknown 58.9
Periaquaductal grey, dorsal
nTPM: 136.8
1831 Male, age 72, unknown 217.8
2850 Male, age 76, both hemispheres 149.7
1840 Male, age 53, unknown 102.5
2464 Female, age 72, unknown 77.4
Periaquaductal grey, lateral
nTPM: 266.5
2053 Male, age 18, unknown 345.4
2272 Male, age 74, both hemispheres 311.2
2140 Male, age 76, both hemispheres 142.9
Pretectal area
nTPM: 95.8
2273 Male, age 74, both hemispheres 330.2
2224 Female, age 72, unknown 156.5
2825 Male, age 18, unknown 119.4
2407 Male, age 75, both hemispheres 110.1
2316 Male, age 76, right hemisphere 89.8
1815 Male, age 53, unknown 60.3
2667 Female, age 75, unknown 56.0
1944 Female, age 72, unknown 49.3
1817 Female, age 42, unknown 38.7
1816 Male, age 51, unknown 22.4
2007 Male, age 72, unknown 21.4
Red nucleus
nTPM: 73.0
2725 Female, age 75, unknown 225.7
2785 Male, age 18, unknown 96.7
1821 Female, age 72, unknown 78.8
2823 Male, age 76, right hemisphere 77.5
1865 Male, age 51, unknown 69.3
2503 Female, age 72, unknown 62.3
2769 Male, age 72, unknown 60.2
2227 Male, age 72, unknown 58.0
2584 Male, age 75, left hemisphere 46.0
1954 Female, age 42, unknown 37.4
1904 Male, age 53, unknown 33.3
2588 Male, age 74, left hemisphere 30.7
Substantia nigra
nTPM: 100.7
2409 Female, age 72, unknown 193.6
1851 Male, age 51, unknown 179.5
1941 Male, age 53, unknown 132.4
2590 Female, age 75, unknown 117.9
2699 Male, age 18, unknown 116.4
1916 Female, age 42, unknown 70.5
2241 Male, age 72, unknown 62.7
1889 Female, age 72, unknown 52.6
2583 Male, age 75, right hemisphere 51.1
2665 Male, age 74, both hemispheres 30.6
Superior colliculus
nTPM: 118.3
1913 Female, age 42, unknown 265.6
1995 Male, age 72, unknown 219.4
2587 Male, age 74, left hemisphere 195.4
1796 Male, age 53, unknown 132.7
2087 Female, age 72, unknown 103.0
2664 Male, age 75, both hemispheres 81.7
1839 Male, age 51, unknown 58.4
2261 Male, age 18, unknown 53.7
1895 Male, age 76, right hemisphere 36.5
2668 Female, age 75, unknown 36.5
Ventral tegmental area
nTPM: 141.6
1915 Female, age 42, unknown 220.3
2021 Male, age 53, unknown 209.0
2223 Female, age 72, unknown 169.2
1942 Male, age 51, unknown 103.7
2218 Male, age 76, both hemispheres 75.7
2410 Female, age 72, unknown 71.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 266.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 266.9
Samples: 139

Max nTPM: 3738.2
Min nTPM: 5.5
Std nTPM: 517.4
Median nTPM: 90.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3738.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3281.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2229.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1872.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1407.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1164.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1109.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1046.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 966.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 952.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 819.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 862.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 862.5
FF:10158-103A5 76 years, female 862.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 25.5
Min nTPM: 24.1
Sample A Male 24.3
Sample B Male 25.5
Sample C Female 25.0
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0

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