On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
253.2
nTPM
HPA Brain:
267.8
nTPM
GTEx:
253.2
nTPM
FANTOM5:
862.5
Scaled Tags Per Million
Macaque:
18.2
nTPM
Mouse:
0.0
nTPM
Pig:
0.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
267.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 67.4
1870
Female, age 42, unknown
112.3
2586
Male, age 75, left hemisphere
99.4
2828
Female, age 72, unknown
95.1
2666
Male, age 74, left hemisphere
89.6
1830
Male, age 51, unknown
62.0
1827
Male, age 72, unknown
56.9
1833
Male, age 53, unknown
55.5
2411
Female, age 72, unknown
42.6
2019
Male, age 18, unknown
36.4
2219
Male, age 76, both hemispheres
23.8
Dorsal raphe nucleus nTPM: 121.0
2047
Male, age 72, unknown
157.7
2016
Female, age 72, unknown
154.1
1828
Male, age 53, unknown
127.0
2298
Female, age 72, unknown
105.3
2750
Male, age 76, both hemispheres
61.1
Inferior colliculus nTPM: 55.2
2097
Female, age 72, unknown
79.3
2849
Male, age 72, unknown
51.1
1848
Female, age 42, unknown
50.3
1890
Male, age 53, unknown
40.1
Median raphe nucleus nTPM: 77.7
2220
Male, age 76, midline
77.7
Periaquaductal grey, anterior nTPM: 127.9
1795
Male, age 51, unknown
259.7
2502
Female, age 75, unknown
65.0
1947
Male, age 18, unknown
59.1
Periaquaductal grey, dorsal nTPM: 137.4
1831
Male, age 72, unknown
218.4
2850
Male, age 76, both hemispheres
150.8
1840
Male, age 53, unknown
102.7
2464
Female, age 72, unknown
77.7
Periaquaductal grey, lateral nTPM: 267.8
2053
Male, age 18, unknown
346.4
2272
Male, age 74, both hemispheres
312.9
2140
Male, age 76, both hemispheres
144.0
Pretectal area nTPM: 96.1
2273
Male, age 74, both hemispheres
332.1
2224
Female, age 72, unknown
157.2
2825
Male, age 18, unknown
119.7
2407
Male, age 75, both hemispheres
108.8
2316
Male, age 76, right hemisphere
90.4
1815
Male, age 53, unknown
60.4
2667
Female, age 75, unknown
56.1
1944
Female, age 72, unknown
49.5
1817
Female, age 42, unknown
38.8
1816
Male, age 51, unknown
22.5
2007
Male, age 72, unknown
21.5
Red nucleus nTPM: 73.2
2725
Female, age 75, unknown
226.2
2785
Male, age 18, unknown
97.0
1821
Female, age 72, unknown
79.1
2823
Male, age 76, right hemisphere
78.1
1865
Male, age 51, unknown
69.5
2503
Female, age 72, unknown
62.6
2769
Male, age 72, unknown
60.4
2227
Male, age 72, unknown
58.2
2584
Male, age 75, left hemisphere
45.4
1954
Female, age 42, unknown
37.5
1904
Male, age 53, unknown
33.4
2588
Male, age 74, left hemisphere
30.9
Substantia nigra nTPM: 101.0
2409
Female, age 72, unknown
194.4
1851
Male, age 51, unknown
180.0
1941
Male, age 53, unknown
132.8
2590
Female, age 75, unknown
118.1
2699
Male, age 18, unknown
116.7
1916
Female, age 42, unknown
70.8
2241
Male, age 72, unknown
62.9
1889
Female, age 72, unknown
52.8
2583
Male, age 75, right hemisphere
50.5
2665
Male, age 74, both hemispheres
30.7
Superior colliculus nTPM: 118.6
1913
Female, age 42, unknown
266.7
1995
Male, age 72, unknown
220.1
2587
Male, age 74, left hemisphere
196.5
1796
Male, age 53, unknown
133.1
2087
Female, age 72, unknown
103.4
2664
Male, age 75, both hemispheres
80.7
1839
Male, age 51, unknown
58.5
2261
Male, age 18, unknown
53.8
1895
Male, age 76, right hemisphere
36.8
2668
Female, age 75, unknown
36.6
Ventral tegmental area nTPM: 142.1
1915
Female, age 42, unknown
221.1
2021
Male, age 53, unknown
209.6
2223
Female, age 72, unknown
169.9
1942
Male, age 51, unknown
104.0
2218
Male, age 76, both hemispheres
76.2
2410
Female, age 72, unknown
71.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
253.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 253.2
Samples: 183
Max nTPM: 3686.5
Min nTPM: 1.9
Std nTPM: 469.5
Median nTPM: 85.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3686.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
3216.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2176.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1831.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1432.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1390.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1142.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1028.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
989.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
988.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
941.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
935.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
804.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
783.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
742.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
726.6
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
701.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
692.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
670.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
670.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
654.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
611.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
588.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
578.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
550.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
528.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
514.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
457.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
444.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
441.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
404.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
378.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
342.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
312.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
304.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
302.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
300.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
290.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
290.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
279.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
277.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
275.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
272.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
271.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
263.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
263.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
260.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
258.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
249.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
246.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
245.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
234.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
222.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
221.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
212.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
194.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
192.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
182.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
176.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
164.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
162.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
161.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
160.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
159.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
156.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
154.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
154.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
154.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
141.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
141.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
138.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
133.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
123.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
123.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
121.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
120.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
117.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
115.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
104.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
104.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
103.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
103.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
98.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
97.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
93.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
93.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
89.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
89.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
88.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
88.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
87.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
85.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
85.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
84.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
83.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
79.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
77.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
76.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
76.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
75.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
72.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
71.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
71.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
68.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
67.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
66.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
66.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
65.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
64.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
60.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
59.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
58.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
57.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
56.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
56.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
53.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
53.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
51.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
51.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
50.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
48.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
48.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
47.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
46.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
43.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
42.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
41.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
41.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
41.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
41.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
40.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
40.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
40.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
39.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
38.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
37.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
37.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
36.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
36.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
35.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
34.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
34.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
33.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
33.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
33.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
33.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
32.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
32.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
32.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
30.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
29.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
28.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
28.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
28.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
27.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
27.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
27.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
27.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
26.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
26.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
24.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
24.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
23.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
22.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
21.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
21.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
20.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
20.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
19.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
17.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
16.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
15.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
14.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
13.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
13.4
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
12.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
12.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
12.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
11.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
10.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
5.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
1.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 18.2
Samples: 1
Max nTPM: 18.2
Min nTPM: 18.2
Sample A
18.2
Midbrain nTPM: 16.3
Samples: 1
Max nTPM: 16.3
Min nTPM: 16.3
Sample A
16.3
Superior colliculi nTPM: 17.7
Samples: 1
Max nTPM: 17.7
Min nTPM: 17.7
Sample A
17.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 0.0
Samples: 3
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Female
0.0
Sample B
Female
0.0
Sample C
Male
0.0
Midbrain nTPM: 0.0
Samples: 3
Max nTPM: 0.0
Min nTPM: 0.0
Sample B
Female
0.0
Sample C
Male
0.0
Sample D
Male
0.0
Periaqueductal gray nTPM: 0.0
Samples: 3
Max nTPM: 0.0
Min nTPM: 0.0
Sample B
Female
0.0
Sample C
Male
0.0
Sample D
Male
0.0
Superior colliculi nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Female
0.0
Sample B
Female
0.0
Sample C
Male
0.0
Sample D
Male
0.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 15.6
Samples: 4
Max nTPM: 16.3
Min nTPM: 15.3
Sample A
15.3
Sample B
15.6
Sample C
16.3
Sample D
15.3
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The Human Protein Atlas project is funded
