MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:166.1 nTPM
HPA Brain:183.0 nTPM
GTEx:166.1 nTPM
FANTOM5:331.9 Scaled Tags Per Million
Pig:304.8 nTPM
Mouse:265.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 183.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.9
1827 Male, age 72, unknown 157.0
2411 Female, age 72, unknown 140.4
1870 Female, age 42, unknown 132.6
2828 Female, age 72, unknown 130.6
2219 Male, age 76, both hemispheres 125.5
2666 Male, age 74, left hemisphere 108.2
2019 Male, age 18, unknown 91.9
2586 Male, age 75, left hemisphere 89.0
1830 Male, age 51, unknown 83.5
1833 Male, age 53, unknown 79.8
Dorsal raphe nucleus
nTPM: 145.1
2298 Female, age 72, unknown 203.6
2047 Male, age 72, unknown 172.8
2750 Male, age 76, both hemispheres 153.8
1828 Male, age 53, unknown 102.6
2016 Female, age 72, unknown 92.6
Inferior colliculus
nTPM: 92.6
2097 Female, age 72, unknown 109.2
2849 Male, age 72, unknown 91.0
1890 Male, age 53, unknown 88.5
1848 Female, age 42, unknown 81.5
Median raphe nucleus
nTPM: 183.0
2220 Male, age 76, midline 183.0
Periaquaductal grey, anterior
nTPM: 154.2
1795 Male, age 51, unknown 187.0
1947 Male, age 18, unknown 159.2
2502 Female, age 75, unknown 116.4
Periaquaductal grey, dorsal
nTPM: 116.8
1840 Male, age 53, unknown 145.4
2850 Male, age 76, both hemispheres 126.2
1831 Male, age 72, unknown 101.7
2464 Female, age 72, unknown 93.8
Periaquaductal grey, lateral
nTPM: 114.5
2272 Male, age 74, both hemispheres 121.7
2053 Male, age 18, unknown 117.9
2140 Male, age 76, both hemispheres 104.0
Pretectal area
nTPM: 129.2
2224 Female, age 72, unknown 179.2
1816 Male, age 51, unknown 161.3
1944 Female, age 72, unknown 152.1
2007 Male, age 72, unknown 132.6
2825 Male, age 18, unknown 128.8
2273 Male, age 74, both hemispheres 128.2
1817 Female, age 42, unknown 121.0
2667 Female, age 75, unknown 120.9
1815 Male, age 53, unknown 109.5
2407 Male, age 75, both hemispheres 96.8
2316 Male, age 76, right hemisphere 91.2
Red nucleus
nTPM: 80.6
2725 Female, age 75, unknown 113.7
2584 Male, age 75, left hemisphere 94.1
2785 Male, age 18, unknown 88.9
1821 Female, age 72, unknown 87.3
1954 Female, age 42, unknown 82.5
2823 Male, age 76, right hemisphere 77.0
1904 Male, age 53, unknown 76.3
2503 Female, age 72, unknown 76.2
2227 Male, age 72, unknown 73.9
2769 Male, age 72, unknown 73.9
1865 Male, age 51, unknown 71.0
2588 Male, age 74, left hemisphere 52.6
Substantia nigra
nTPM: 137.0
1916 Female, age 42, unknown 197.7
1851 Male, age 51, unknown 158.8
1941 Male, age 53, unknown 152.9
2241 Male, age 72, unknown 147.9
2665 Male, age 74, both hemispheres 144.7
1889 Female, age 72, unknown 128.1
2590 Female, age 75, unknown 127.7
2409 Female, age 72, unknown 116.8
2699 Male, age 18, unknown 102.9
2583 Male, age 75, right hemisphere 92.8
Superior colliculus
nTPM: 109.7
1796 Male, age 53, unknown 168.1
2261 Male, age 18, unknown 135.8
2587 Male, age 74, left hemisphere 128.1
2087 Female, age 72, unknown 116.9
2668 Female, age 75, unknown 106.7
1839 Male, age 51, unknown 94.1
1913 Female, age 42, unknown 93.2
1895 Male, age 76, right hemisphere 93.1
2664 Male, age 75, both hemispheres 91.5
1995 Male, age 72, unknown 69.0
Ventral tegmental area
nTPM: 145.6
2410 Female, age 72, unknown 156.7
1915 Female, age 42, unknown 155.0
2218 Male, age 76, both hemispheres 152.4
2021 Male, age 53, unknown 150.0
1942 Male, age 51, unknown 130.9
2223 Female, age 72, unknown 128.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 166.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 166.1
Samples: 183

Max nTPM: 347.9
Min nTPM: 59.2
Std nTPM: 63.0
Median nTPM: 153.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 347.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 345.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 335.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 326.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 325.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 323.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 319.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 308.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 305.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 297.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 293.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 331.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 331.9
FF:10158-103A5 76 years, female 331.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 304.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 272.3
Samples: 4

Max nTPM: 372.9
Min nTPM: 179.6
Sample A Female 372.9
Sample B Female 221.9
Sample C Male 314.6
Sample D Male 179.6
Midbrain
nTPM: 304.8
Samples: 4

Max nTPM: 428.1
Min nTPM: 201.1
Sample A Female 367.1
Sample B Female 201.1
Sample C Male 428.1
Sample D Male 223.0
Periaqueductal gray
nTPM: 196.7
Samples: 3

Max nTPM: 245.6
Min nTPM: 167.2
Sample B Female 167.2
Sample C Male 245.6
Sample D Male 177.4
Superior colliculi
nTPM: 290.7
Samples: 4

Max nTPM: 360.4
Min nTPM: 250.2
Sample A Female 291.2
Sample B Female 261.1
Sample C Male 360.4
Sample D Male 250.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 265.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 265.1
Samples: 4

Max nTPM: 279.7
Min nTPM: 247.1
Sample A Male 279.7
Sample B Male 263.0
Sample C Female 247.1
Sample D Female 270.4

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