MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:199.1 nTPM
HPA Brain:89.8 nTPM
GTEx:199.1 nTPM
FANTOM5:136.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.3
2666 Male, age 74, left hemisphere 71.8
1870 Female, age 42, unknown 67.9
2219 Male, age 76, both hemispheres 67.2
1833 Male, age 53, unknown 64.8
1827 Male, age 72, unknown 64.0
2411 Female, age 72, unknown 61.8
2586 Male, age 75, left hemisphere 59.7
1830 Male, age 51, unknown 59.0
2828 Female, age 72, unknown 57.9
2019 Male, age 18, unknown 48.6
Dorsal raphe nucleus
nTPM: 50.7
2750 Male, age 76, both hemispheres 57.8
1828 Male, age 53, unknown 56.7
2047 Male, age 72, unknown 53.5
2016 Female, age 72, unknown 46.7
2298 Female, age 72, unknown 38.6
Inferior colliculus
nTPM: 63.0
2849 Male, age 72, unknown 88.2
1848 Female, age 42, unknown 61.2
1890 Male, age 53, unknown 56.7
2097 Female, age 72, unknown 45.9
Median raphe nucleus
nTPM: 89.8
2220 Male, age 76, midline 89.8
Periaquaductal grey, anterior
nTPM: 52.9
2502 Female, age 75, unknown 56.9
1795 Male, age 51, unknown 50.9
1947 Male, age 18, unknown 50.9
Periaquaductal grey, dorsal
nTPM: 66.8
2850 Male, age 76, both hemispheres 91.7
2464 Female, age 72, unknown 64.3
1840 Male, age 53, unknown 59.3
1831 Male, age 72, unknown 51.9
Periaquaductal grey, lateral
nTPM: 51.7
2140 Male, age 76, both hemispheres 67.5
2053 Male, age 18, unknown 47.2
2272 Male, age 74, both hemispheres 40.6
Pretectal area
nTPM: 53.3
2825 Male, age 18, unknown 66.0
2407 Male, age 75, both hemispheres 61.0
1815 Male, age 53, unknown 56.9
1816 Male, age 51, unknown 55.7
1817 Female, age 42, unknown 54.7
2007 Male, age 72, unknown 54.5
2224 Female, age 72, unknown 53.1
1944 Female, age 72, unknown 52.2
2667 Female, age 75, unknown 48.7
2316 Male, age 76, right hemisphere 45.7
2273 Male, age 74, both hemispheres 37.4
Red nucleus
nTPM: 67.4
2725 Female, age 75, unknown 85.4
2503 Female, age 72, unknown 84.9
2588 Male, age 74, left hemisphere 80.2
1865 Male, age 51, unknown 68.6
1954 Female, age 42, unknown 68.2
2227 Male, age 72, unknown 65.3
2769 Male, age 72, unknown 64.8
1904 Male, age 53, unknown 63.3
2823 Male, age 76, right hemisphere 59.3
2785 Male, age 18, unknown 57.6
1821 Female, age 72, unknown 56.0
2584 Male, age 75, left hemisphere 55.4
Substantia nigra
nTPM: 56.0
2699 Male, age 18, unknown 77.7
1941 Male, age 53, unknown 64.6
1916 Female, age 42, unknown 60.9
2409 Female, age 72, unknown 58.4
1889 Female, age 72, unknown 56.3
1851 Male, age 51, unknown 53.2
2665 Male, age 74, both hemispheres 52.6
2241 Male, age 72, unknown 48.1
2583 Male, age 75, right hemisphere 44.5
2590 Female, age 75, unknown 44.2
Superior colliculus
nTPM: 52.4
1895 Male, age 76, right hemisphere 57.1
2587 Male, age 74, left hemisphere 56.5
1839 Male, age 51, unknown 56.1
1913 Female, age 42, unknown 53.2
1796 Male, age 53, unknown 51.4
2087 Female, age 72, unknown 51.3
2668 Female, age 75, unknown 51.3
2664 Male, age 75, both hemispheres 49.9
2261 Male, age 18, unknown 48.8
1995 Male, age 72, unknown 48.4
Ventral tegmental area
nTPM: 59.6
2223 Female, age 72, unknown 71.2
2218 Male, age 76, both hemispheres 69.3
1915 Female, age 42, unknown 60.3
1942 Male, age 51, unknown 57.5
2021 Male, age 53, unknown 50.5
2410 Female, age 72, unknown 48.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 199.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.1
Samples: 183

Max nTPM: 460.5
Min nTPM: 67.2
Std nTPM: 63.9
Median nTPM: 185.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 460.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 411.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 404.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 349.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 346.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 340.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 339.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 335.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 332.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 320.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 315.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 136.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.2
FF:10158-103A5 76 years, female 136.2

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