MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:896.6 nTPM
HPA Brain:236.6 nTPM
GTEx:896.6 nTPM
FANTOM5:236.9 Scaled Tags Per Million
Pig:182.8 nTPM
Mouse:576.7 nTPM
Allen mouse:13.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 236.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 208.9
1870 Female, age 42, unknown 229.3
2666 Male, age 74, left hemisphere 227.7
2828 Female, age 72, unknown 223.1
1827 Male, age 72, unknown 218.7
2019 Male, age 18, unknown 209.0
1830 Male, age 51, unknown 206.3
1833 Male, age 53, unknown 205.5
2411 Female, age 72, unknown 202.8
2219 Male, age 76, both hemispheres 188.8
2586 Male, age 75, left hemisphere 177.4
Dorsal raphe nucleus
nTPM: 223.4
2298 Female, age 72, unknown 254.9
2016 Female, age 72, unknown 236.3
1828 Male, age 53, unknown 217.1
2750 Male, age 76, both hemispheres 210.5
2047 Male, age 72, unknown 198.4
Inferior colliculus
nTPM: 219.7
2097 Female, age 72, unknown 240.5
2849 Male, age 72, unknown 221.8
1890 Male, age 53, unknown 218.9
1848 Female, age 42, unknown 197.8
Median raphe nucleus
nTPM: 216.2
2220 Male, age 76, midline 216.2
Periaquaductal grey, anterior
nTPM: 217.7
2502 Female, age 75, unknown 236.2
1795 Male, age 51, unknown 208.9
1947 Male, age 18, unknown 208.1
Periaquaductal grey, dorsal
nTPM: 201.2
1840 Male, age 53, unknown 220.3
2850 Male, age 76, both hemispheres 206.3
1831 Male, age 72, unknown 201.0
2464 Female, age 72, unknown 177.3
Periaquaductal grey, lateral
nTPM: 217.4
2053 Male, age 18, unknown 230.9
2272 Male, age 74, both hemispheres 212.1
2140 Male, age 76, both hemispheres 209.2
Pretectal area
nTPM: 221.2
1817 Female, age 42, unknown 237.7
2407 Male, age 75, both hemispheres 230.7
1816 Male, age 51, unknown 229.4
2825 Male, age 18, unknown 226.7
2224 Female, age 72, unknown 226.0
1815 Male, age 53, unknown 219.9
2007 Male, age 72, unknown 219.7
2316 Male, age 76, right hemisphere 216.2
1944 Female, age 72, unknown 214.7
2273 Male, age 74, both hemispheres 213.2
2667 Female, age 75, unknown 198.5
Red nucleus
nTPM: 226.5
2503 Female, age 72, unknown 261.0
2725 Female, age 75, unknown 259.1
1821 Female, age 72, unknown 251.6
2584 Male, age 75, left hemisphere 241.6
1865 Male, age 51, unknown 232.6
1904 Male, age 53, unknown 220.9
2769 Male, age 72, unknown 219.1
2785 Male, age 18, unknown 212.6
2227 Male, age 72, unknown 210.6
2823 Male, age 76, right hemisphere 210.2
1954 Female, age 42, unknown 207.1
2588 Male, age 74, left hemisphere 191.2
Substantia nigra
nTPM: 236.6
2241 Male, age 72, unknown 270.7
2409 Female, age 72, unknown 267.3
2665 Male, age 74, both hemispheres 264.8
2699 Male, age 18, unknown 249.3
1851 Male, age 51, unknown 239.7
1889 Female, age 72, unknown 233.7
2590 Female, age 75, unknown 221.8
1916 Female, age 42, unknown 219.6
1941 Male, age 53, unknown 213.9
2583 Male, age 75, right hemisphere 185.2
Superior colliculus
nTPM: 218.2
2587 Male, age 74, left hemisphere 278.5
1913 Female, age 42, unknown 235.3
1796 Male, age 53, unknown 227.7
1995 Male, age 72, unknown 220.1
1839 Male, age 51, unknown 212.7
1895 Male, age 76, right hemisphere 208.7
2261 Male, age 18, unknown 207.0
2668 Female, age 75, unknown 205.0
2664 Male, age 75, both hemispheres 195.6
2087 Female, age 72, unknown 191.8
Ventral tegmental area
nTPM: 226.1
2223 Female, age 72, unknown 249.4
1915 Female, age 42, unknown 248.1
2021 Male, age 53, unknown 229.5
1942 Male, age 51, unknown 221.1
2410 Female, age 72, unknown 208.9
2218 Male, age 76, both hemispheres 199.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 896.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 896.6
Samples: 183

Max nTPM: 1802.6
Min nTPM: 439.4
Std nTPM: 252.1
Median nTPM: 862.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1802.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1688.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1669.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1507.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1464.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1464.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1455.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1437.4
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1423.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1316.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1298.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 236.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 236.9
FF:10158-103A5 76 years, female 236.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 182.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 171.4
Samples: 4

Max nTPM: 222.8
Min nTPM: 139.5
Sample A Female 222.8
Sample B Female 180.1
Sample C Male 143.0
Sample D Male 139.5
Midbrain
nTPM: 168.6
Samples: 4

Max nTPM: 215.1
Min nTPM: 137.8
Sample A Female 215.1
Sample B Female 176.8
Sample C Male 137.8
Sample D Male 144.7
Periaqueductal gray
nTPM: 148.5
Samples: 3

Max nTPM: 158.5
Min nTPM: 140.0
Sample B Female 147.1
Sample C Male 158.5
Sample D Male 140.0
Superior colliculi
nTPM: 182.8
Samples: 4

Max nTPM: 213.3
Min nTPM: 160.5
Sample A Female 213.3
Sample B Female 193.5
Sample C Male 163.9
Sample D Male 160.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 576.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 576.7
Samples: 4

Max nTPM: 590.0
Min nTPM: 551.4
Sample A Male 578.3
Sample B Male 590.0
Sample C Female 551.4
Sample D Female 587.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
69170150 Antisense, RP_050321_04_F12, Mouse strain C57BL/6J (56 days, male) 13.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo