MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA Brain:117.5 nTPM
GTEx:36.5 nTPM
FANTOM5:148.8 Scaled Tags Per Million
Pig:50.7 nTPM
Mouse:26.8 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.5
2411 Female, age 72, unknown 112.8
1833 Male, age 53, unknown 111.7
1830 Male, age 51, unknown 111.2
2019 Male, age 18, unknown 111.1
2219 Male, age 76, both hemispheres 102.3
1870 Female, age 42, unknown 101.3
2586 Male, age 75, left hemisphere 100.2
2828 Female, age 72, unknown 94.6
2666 Male, age 74, left hemisphere 82.6
1827 Male, age 72, unknown 77.4
Dorsal raphe nucleus
nTPM: 77.1
2750 Male, age 76, both hemispheres 120.7
1828 Male, age 53, unknown 73.4
2016 Female, age 72, unknown 70.4
2047 Male, age 72, unknown 61.5
2298 Female, age 72, unknown 59.6
Inferior colliculus
nTPM: 74.0
1890 Male, age 53, unknown 76.5
1848 Female, age 42, unknown 75.3
2849 Male, age 72, unknown 75.2
2097 Female, age 72, unknown 69.1
Median raphe nucleus
nTPM: 76.0
2220 Male, age 76, midline 76.0
Periaquaductal grey, anterior
nTPM: 79.4
2502 Female, age 75, unknown 98.0
1947 Male, age 18, unknown 70.9
1795 Male, age 51, unknown 69.2
Periaquaductal grey, dorsal
nTPM: 58.2
2464 Female, age 72, unknown 75.4
1831 Male, age 72, unknown 62.5
1840 Male, age 53, unknown 49.7
2850 Male, age 76, both hemispheres 45.1
Periaquaductal grey, lateral
nTPM: 65.0
2272 Male, age 74, both hemispheres 80.7
2053 Male, age 18, unknown 66.3
2140 Male, age 76, both hemispheres 47.9
Pretectal area
nTPM: 80.6
2667 Female, age 75, unknown 91.8
2407 Male, age 75, both hemispheres 90.7
1815 Male, age 53, unknown 89.9
2007 Male, age 72, unknown 88.9
1817 Female, age 42, unknown 85.2
2316 Male, age 76, right hemisphere 80.2
1944 Female, age 72, unknown 78.4
1816 Male, age 51, unknown 76.0
2825 Male, age 18, unknown 73.2
2224 Female, age 72, unknown 68.6
2273 Male, age 74, both hemispheres 63.5
Red nucleus
nTPM: 117.5
2823 Male, age 76, right hemisphere 135.7
1904 Male, age 53, unknown 134.2
1865 Male, age 51, unknown 130.7
2785 Male, age 18, unknown 124.0
2769 Male, age 72, unknown 123.5
2588 Male, age 74, left hemisphere 120.4
2227 Male, age 72, unknown 118.5
2503 Female, age 72, unknown 117.4
1821 Female, age 72, unknown 115.4
2584 Male, age 75, left hemisphere 112.5
1954 Female, age 42, unknown 94.3
2725 Female, age 75, unknown 82.8
Substantia nigra
nTPM: 95.2
1916 Female, age 42, unknown 114.4
1851 Male, age 51, unknown 106.9
2699 Male, age 18, unknown 101.9
2583 Male, age 75, right hemisphere 98.7
2241 Male, age 72, unknown 93.8
1941 Male, age 53, unknown 93.5
2409 Female, age 72, unknown 92.3
1889 Female, age 72, unknown 89.3
2590 Female, age 75, unknown 88.8
2665 Male, age 74, both hemispheres 72.6
Superior colliculus
nTPM: 89.1
1913 Female, age 42, unknown 113.5
1995 Male, age 72, unknown 103.9
2668 Female, age 75, unknown 92.1
2587 Male, age 74, left hemisphere 91.4
1895 Male, age 76, right hemisphere 91.0
1839 Male, age 51, unknown 89.2
2087 Female, age 72, unknown 85.7
1796 Male, age 53, unknown 80.2
2261 Male, age 18, unknown 79.8
2664 Male, age 75, both hemispheres 64.0
Ventral tegmental area
nTPM: 100.9
2410 Female, age 72, unknown 127.5
2223 Female, age 72, unknown 117.3
2218 Male, age 76, both hemispheres 104.1
1915 Female, age 42, unknown 87.8
2021 Male, age 53, unknown 85.9
1942 Male, age 51, unknown 82.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.5
Samples: 183

Max nTPM: 129.2
Min nTPM: 8.9
Std nTPM: 14.3
Median nTPM: 34.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 129.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 81.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 74.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 72.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 72.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 68.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 67.1
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 66.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 62.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 59.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 58.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.8
FF:10158-103A5 76 years, female 148.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.6
Samples: 4

Max nTPM: 43.1
Min nTPM: 35.2
Sample A Female 41.9
Sample B Female 35.2
Sample C Male 43.1
Sample D Male 42.1
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 65.6
Min nTPM: 35.1
Sample A Female 48.7
Sample B Female 35.1
Sample C Male 65.6
Sample D Male 41.1
Periaqueductal gray
nTPM: 35.4
Samples: 3

Max nTPM: 39.3
Min nTPM: 32.4
Sample B Female 34.6
Sample C Male 39.3
Sample D Male 32.4
Superior colliculi
nTPM: 50.7
Samples: 4

Max nTPM: 63.6
Min nTPM: 42.5
Sample A Female 42.5
Sample B Female 49.5
Sample C Male 63.6
Sample D Male 47.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 28.0
Min nTPM: 26.1
Sample A Male 26.2
Sample B Male 28.0
Sample C Female 26.1
Sample D Female 26.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
70523825 Antisense, RP_050309_01_G11, Mouse strain C57BL/6J (56 days, male) 3.9

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