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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1059.0 nTPM
HPA Brain:208.4 nTPM
GTEx:1059.0 nTPM
FANTOM5:197.2 Scaled Tags Per Million
Pig:68.4 nTPM
Mouse:73.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.4
Sample id Sample description nTPM
Amygdala
nTPM: 208.4
2695 Female, age 67, right hemisphere 255.6
2514 Male, age 75, right hemisphere 239.6
2517 Female, age 94, left hemisphere 183.8
1987 Female, age 91, left hemisphere 182.0
2814 Male, age 76, right hemisphere 180.7
Basal amygdala
nTPM: 167.2
2827 Female, age 67, right hemisphere 203.4
2609 Male, age 75, right hemisphere 196.4
2110 Male, age 80, left hemisphere 182.8
2685 Female, age 94, left hemisphere 169.2
1955 Male, age 76, both hemispheres 135.3
2243 Female, age 91, right hemisphere 115.8
Central amygdala
nTPM: 198.4
2826 Female, age 94, left hemisphere 314.5
2515 Male, age 75, right hemisphere 211.1
1905 Male, age 76, both hemispheres 191.5
2701 Female, age 91, right hemisphere 139.1
2239 Male, age 80, left hemisphere 135.9
Corticomedial amygdala
nTPM: 157.6
2428 Male, age 75, right hemisphere 198.2
2829 Male, age 80, left hemisphere 191.0
2429 Female, age 94, left hemisphere 167.8
2240 Male, age 76, both hemispheres 134.5
2535 Female, age 67, right hemisphere 128.0
2242 Female, age 91, right hemisphere 126.1
Lateral amygdala
nTPM: 184.8
2516 Male, age 75, right hemisphere 254.8
2830 Female, age 67, right hemisphere 252.6
2534 Female, age 94, left hemisphere 198.8
1883 Male, age 76, both hemispheres 151.5
2256 Male, age 80, left hemisphere 128.1
2255 Female, age 91, right hemisphere 122.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1059.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1059.0
Samples: 181

Max nTPM: 3843.2
Min nTPM: 447.1
Std nTPM: 426.9
Median nTPM: 958.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3843.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3351.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2534.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2280.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2202.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2056.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1755.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1741.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1729.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1695.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1694.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1654.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1654.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1520.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1513.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1506.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1505.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1490.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1484.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1476.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1464.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1462.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1405.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1371.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1341.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1332.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1327.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1322.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1319.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1318.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1300.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1298.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1294.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1277.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1276.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1271.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1265.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1257.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1256.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1252.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1242.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1237.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1214.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1201.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1198.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1196.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1178.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1172.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1171.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1165.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1164.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1154.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1143.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1142.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1140.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1131.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1127.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1126.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1125.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1119.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1115.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1111.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1110.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1105.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1099.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1096.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1095.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1094.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1091.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1085.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1075.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1074.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1070.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1070.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1070.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1053.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1037.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1029.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1013.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1009.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1007.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1004.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1000.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 996.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 990.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 983.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 983.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 979.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 978.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 970.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 958.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 957.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 954.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 952.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 949.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 948.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 944.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 942.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 941.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 939.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 937.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 936.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 931.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 923.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 923.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 922.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 916.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 907.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 905.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 901.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 898.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 897.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 892.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 891.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 889.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 883.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 876.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 873.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 871.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 863.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 862.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 861.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 855.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 854.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 853.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 852.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 851.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 846.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 844.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 842.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 836.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 830.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 817.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 809.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 799.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 796.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 795.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 794.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 791.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 788.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 777.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 777.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 775.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 774.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 771.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 766.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 751.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 750.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 748.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 747.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 743.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 734.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 730.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 724.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 714.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 702.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 699.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 694.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 684.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 683.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 679.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 675.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 668.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 662.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 651.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 646.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 643.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 637.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 633.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 631.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 626.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 626.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 621.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 620.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 613.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 600.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 598.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 587.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 545.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 533.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 447.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.2
FF:10151-102I7 76 years, female 197.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.4
Pig sample Sample description nTPM
Amygdala
nTPM: 68.4
Samples: 4

Max nTPM: 80.8
Min nTPM: 52.7
Sample A Female 80.8
Sample B Female 77.6
Sample C Male 62.4
Sample D Male 52.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 73.2
Samples: 4

Max nTPM: 82.4
Min nTPM: 67.4
Sample A Male 67.4
Sample B Male 69.0
Sample C Female 82.4
Sample D Female 73.8

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