MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:962.3 nTPM
HPA Brain:205.1 nTPM
GTEx:962.3 nTPM
FANTOM5:216.0 Scaled Tags Per Million
Pig:90.8 nTPM
Mouse:59.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 205.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 167.3
2666 Male, age 74, left hemisphere 202.0
1870 Female, age 42, unknown 185.4
1827 Male, age 72, unknown 182.4
2411 Female, age 72, unknown 182.2
2019 Male, age 18, unknown 175.4
2586 Male, age 75, left hemisphere 165.5
2828 Female, age 72, unknown 160.2
1830 Male, age 51, unknown 145.8
1833 Male, age 53, unknown 142.3
2219 Male, age 76, both hemispheres 132.1
Dorsal raphe nucleus
nTPM: 184.7
2298 Female, age 72, unknown 222.6
1828 Male, age 53, unknown 193.7
2016 Female, age 72, unknown 173.0
2047 Male, age 72, unknown 167.7
2750 Male, age 76, both hemispheres 166.8
Inferior colliculus
nTPM: 181.6
2097 Female, age 72, unknown 224.1
1890 Male, age 53, unknown 199.4
2849 Male, age 72, unknown 151.7
1848 Female, age 42, unknown 151.3
Median raphe nucleus
nTPM: 145.6
2220 Male, age 76, midline 145.6
Periaquaductal grey, anterior
nTPM: 165.1
2502 Female, age 75, unknown 173.5
1947 Male, age 18, unknown 161.5
1795 Male, age 51, unknown 160.3
Periaquaductal grey, dorsal
nTPM: 156.1
1840 Male, age 53, unknown 183.4
1831 Male, age 72, unknown 154.4
2850 Male, age 76, both hemispheres 145.6
2464 Female, age 72, unknown 140.9
Periaquaductal grey, lateral
nTPM: 142.6
2053 Male, age 18, unknown 169.0
2140 Male, age 76, both hemispheres 151.8
2272 Male, age 74, both hemispheres 106.9
Pretectal area
nTPM: 171.7
2007 Male, age 72, unknown 202.3
1817 Female, age 42, unknown 188.9
1816 Male, age 51, unknown 186.8
2316 Male, age 76, right hemisphere 181.8
1815 Male, age 53, unknown 179.3
2667 Female, age 75, unknown 175.3
2825 Male, age 18, unknown 173.0
2224 Female, age 72, unknown 161.6
1944 Female, age 72, unknown 156.9
2407 Male, age 75, both hemispheres 146.4
2273 Male, age 74, both hemispheres 136.6
Red nucleus
nTPM: 190.6
1821 Female, age 72, unknown 248.6
2503 Female, age 72, unknown 214.5
2588 Male, age 74, left hemisphere 196.9
1904 Male, age 53, unknown 192.5
2769 Male, age 72, unknown 191.4
2227 Male, age 72, unknown 185.4
1865 Male, age 51, unknown 185.1
2725 Female, age 75, unknown 180.9
2584 Male, age 75, left hemisphere 180.7
2823 Male, age 76, right hemisphere 175.9
2785 Male, age 18, unknown 169.1
1954 Female, age 42, unknown 166.6
Substantia nigra
nTPM: 205.1
1851 Male, age 51, unknown 264.8
2665 Male, age 74, both hemispheres 244.5
1916 Female, age 42, unknown 241.7
2409 Female, age 72, unknown 208.3
2241 Male, age 72, unknown 207.2
2699 Male, age 18, unknown 201.4
1889 Female, age 72, unknown 187.4
2590 Female, age 75, unknown 176.9
1941 Male, age 53, unknown 169.7
2583 Male, age 75, right hemisphere 149.3
Superior colliculus
nTPM: 175.5
2587 Male, age 74, left hemisphere 215.4
2668 Female, age 75, unknown 193.7
1895 Male, age 76, right hemisphere 181.0
1796 Male, age 53, unknown 179.3
1913 Female, age 42, unknown 174.3
1995 Male, age 72, unknown 172.1
2664 Male, age 75, both hemispheres 165.8
2087 Female, age 72, unknown 162.3
1839 Male, age 51, unknown 155.7
2261 Male, age 18, unknown 155.4
Ventral tegmental area
nTPM: 179.3
1915 Female, age 42, unknown 234.4
2223 Female, age 72, unknown 191.5
2410 Female, age 72, unknown 170.9
1942 Male, age 51, unknown 166.6
2021 Male, age 53, unknown 162.3
2218 Male, age 76, both hemispheres 150.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 962.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 962.3
Samples: 183

Max nTPM: 2712.5
Min nTPM: 427.4
Std nTPM: 326.7
Median nTPM: 901.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2712.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2146.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1965.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1730.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1704.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1697.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1691.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1663.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1584.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1578.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1548.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 216.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 216.0
FF:10158-103A5 76 years, female 216.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 90.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.8
Samples: 4

Max nTPM: 101.4
Min nTPM: 61.4
Sample A Female 101.4
Sample B Female 69.3
Sample C Male 74.9
Sample D Male 61.4
Midbrain
nTPM: 80.5
Samples: 4

Max nTPM: 90.1
Min nTPM: 73.8
Sample A Female 90.1
Sample B Female 81.0
Sample C Male 77.0
Sample D Male 73.8
Periaqueductal gray
nTPM: 67.1
Samples: 3

Max nTPM: 71.3
Min nTPM: 62.7
Sample B Female 71.3
Sample C Male 67.4
Sample D Male 62.7
Superior colliculi
nTPM: 90.8
Samples: 4

Max nTPM: 98.4
Min nTPM: 76.2
Sample A Female 98.4
Sample B Female 97.7
Sample C Male 90.9
Sample D Male 76.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 59.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.0
Samples: 4

Max nTPM: 67.8
Min nTPM: 52.5
Sample A Male 67.8
Sample B Male 58.6
Sample C Female 52.5
Sample D Female 57.2

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