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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:712.9 nTPM
HPA Brain:272.4 nTPM
GTEx:712.9 nTPM
FANTOM5:227.2 Scaled Tags Per Million
Pig:79.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 210.9
1981 Female, age 72, midline 282.0
2565 Male, age 75, midline 219.1
2048 Male, age 55, midline 215.5
2194 Female, age 79, both hemispheres 173.8
2816 Male, age 47, midline 163.8
Cervical spinal cord, dorsal horn
nTPM: 220.7
2173 Female, age 72, unknown 330.6
2069 Male, age 47, both hemispheres 266.5
2296 Male, age 66, both hemispheres 245.8
1877 Male, age 55, unknown 223.3
2297 Male, age 75, both hemispheres 139.1
2721 Male, age 90, both hemispheres 119.1
Cervical spinal cord, ventral horn
nTPM: 272.4
2480 Male, age 75, both hemispheres 383.5
2098 Female, age 72, unknown 329.5
2809 Male, age 90, both hemispheres 327.2
2068 Male, age 55, unknown 240.8
2295 Male, age 66, both hemispheres 201.5
2820 Female, age 79, both hemispheres 152.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

712.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 712.9
Samples: 204

Max nTPM: 1470.8
Min nTPM: 398.6
Std nTPM: 193.7
Median nTPM: 676.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1470.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1265.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1258.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1202.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1188.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1106.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1106.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1090.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1088.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1082.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1082.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1075.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1058.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1054.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1053.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1043.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1035.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1031.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1030.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1028.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1018.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 998.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 988.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 988.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 987.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 983.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 953.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 944.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 935.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 934.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 932.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 926.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 925.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 919.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 904.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 901.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 888.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 876.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 875.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 873.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 866.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 859.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 857.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 856.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 842.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 839.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 838.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 829.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 819.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 808.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 807.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 802.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 799.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 796.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 792.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 791.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 790.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 786.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 782.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 774.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 773.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 768.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 760.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 758.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 757.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 755.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 743.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 742.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 740.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 740.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 737.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 735.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 730.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 729.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 729.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 728.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 728.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 727.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 727.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 726.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 725.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 720.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 719.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 717.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 715.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 713.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 710.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 706.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 705.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 703.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 701.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 700.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 698.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 696.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 694.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 694.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 692.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 687.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 684.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 681.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 680.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 678.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 674.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 674.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 673.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 671.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 671.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 670.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 668.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 667.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 665.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 662.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 659.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 658.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 658.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 655.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 654.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 653.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 653.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 652.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 650.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 650.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 649.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 648.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 644.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 641.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 638.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 638.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 638.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 637.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 636.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 634.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 634.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 627.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 626.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 625.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 620.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 618.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 618.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 615.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 614.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 613.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 608.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 604.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 603.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 603.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 590.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 580.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 578.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 571.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 567.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 563.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 562.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 560.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 557.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 557.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 556.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 554.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 553.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 551.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 549.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 548.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 548.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 545.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 541.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 541.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 535.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 533.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 532.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 531.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 530.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 528.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 528.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 527.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 526.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 523.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 515.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 509.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 509.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 504.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 502.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 500.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 498.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 489.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 488.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 481.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 477.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 476.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 470.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 467.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 464.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 461.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 458.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 447.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 444.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 444.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 436.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 426.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 422.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 422.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 421.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 404.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 400.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 398.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

227.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 227.2
FF:10181-103D1 60 years, female 315.2
FF:10159-103A6 76 years, female 139.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 74.6
Samples: 4

Max nTPM: 86.4
Min nTPM: 66.0
Sample A Female 69.3
Sample B Female 76.8
Sample C Male 86.4
Sample D Male 66.0
Ventral spinal cord
nTPM: 79.9
Samples: 4

Max nTPM: 87.2
Min nTPM: 71.8
Sample A Female 71.8
Sample B Female 85.9
Sample C Male 87.2
Sample D Male 74.5

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