BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:962.3 nTPM
HPA Brain:205.8 nTPM
GTEx:962.3 nTPM
FANTOM5:216.0 Scaled Tags Per Million
Macaque:144.3 nTPM
Mouse:54.9 nTPM
Rat:124.9 nTPM
Pig:91.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 205.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 167.8
2666 Male, age 74, left hemisphere 202.8
1870 Female, age 42, unknown 185.9
1827 Male, age 72, unknown 182.9
2411 Female, age 72, unknown 182.8
2019 Male, age 18, unknown 175.8
2586 Male, age 75, left hemisphere 166.1
2828 Female, age 72, unknown 160.7
1830 Male, age 51, unknown 146.2
1833 Male, age 53, unknown 142.7
2219 Male, age 76, both hemispheres 132.0
Dorsal raphe nucleus
nTPM: 185.2
2298 Female, age 72, unknown 223.4
1828 Male, age 53, unknown 194.2
2016 Female, age 72, unknown 173.7
2047 Male, age 72, unknown 168.1
2750 Male, age 76, both hemispheres 166.6
Inferior colliculus
nTPM: 182.2
2097 Female, age 72, unknown 224.9
1890 Male, age 53, unknown 199.9
2849 Male, age 72, unknown 152.2
1848 Female, age 42, unknown 151.8
Median raphe nucleus
nTPM: 145.4
2220 Male, age 76, midline 145.4
Periaquaductal grey, anterior
nTPM: 165.6
2502 Female, age 75, unknown 174.0
1947 Male, age 18, unknown 161.9
1795 Male, age 51, unknown 160.8
Periaquaductal grey, dorsal
nTPM: 156.4
1840 Male, age 53, unknown 183.8
1831 Male, age 72, unknown 154.9
2850 Male, age 76, both hemispheres 145.6
2464 Female, age 72, unknown 141.3
Periaquaductal grey, lateral
nTPM: 142.8
2053 Male, age 18, unknown 169.5
2140 Male, age 76, both hemispheres 151.8
2272 Male, age 74, both hemispheres 107.3
Pretectal area
nTPM: 172.2
2007 Male, age 72, unknown 202.9
1817 Female, age 42, unknown 189.5
1816 Male, age 51, unknown 187.2
2316 Male, age 76, right hemisphere 181.7
1815 Male, age 53, unknown 179.6
2667 Female, age 75, unknown 175.7
2825 Male, age 18, unknown 173.5
2224 Female, age 72, unknown 162.2
1944 Female, age 72, unknown 157.3
2407 Male, age 75, both hemispheres 147.1
2273 Male, age 74, both hemispheres 137.1
Red nucleus
nTPM: 191.2
1821 Female, age 72, unknown 249.3
2503 Female, age 72, unknown 215.1
2588 Male, age 74, left hemisphere 197.5
1904 Male, age 53, unknown 193.1
2769 Male, age 72, unknown 191.9
2227 Male, age 72, unknown 185.8
1865 Male, age 51, unknown 185.7
2584 Male, age 75, left hemisphere 181.5
2725 Female, age 75, unknown 181.5
2823 Male, age 76, right hemisphere 175.8
2785 Male, age 18, unknown 169.5
1954 Female, age 42, unknown 167.1
Substantia nigra
nTPM: 205.8
1851 Male, age 51, unknown 265.5
2665 Male, age 74, both hemispheres 245.5
1916 Female, age 42, unknown 242.6
2409 Female, age 72, unknown 209.0
2241 Male, age 72, unknown 207.7
2699 Male, age 18, unknown 202.0
1889 Female, age 72, unknown 188.1
2590 Female, age 75, unknown 177.4
1941 Male, age 53, unknown 170.1
2583 Male, age 75, right hemisphere 149.8
Superior colliculus
nTPM: 176.0
2587 Male, age 74, left hemisphere 216.2
2668 Female, age 75, unknown 194.3
1895 Male, age 76, right hemisphere 180.8
1796 Male, age 53, unknown 179.8
1913 Female, age 42, unknown 174.9
1995 Male, age 72, unknown 172.6
2664 Male, age 75, both hemispheres 166.6
2087 Female, age 72, unknown 162.9
1839 Male, age 51, unknown 156.1
2261 Male, age 18, unknown 155.8
Ventral tegmental area
nTPM: 179.8
1915 Female, age 42, unknown 235.2
2223 Female, age 72, unknown 192.1
2410 Female, age 72, unknown 171.6
1942 Male, age 51, unknown 167.1
2021 Male, age 53, unknown 162.7
2218 Male, age 76, both hemispheres 149.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 962.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 962.3
Samples: 183

Max nTPM: 2712.5
Min nTPM: 427.4
Std nTPM: 326.7
Median nTPM: 901.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2712.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2146.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1965.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1730.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1704.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1697.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1691.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1663.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1584.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1578.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1548.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 216.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 216.0
FF:10158-103A5 76 years, female 216.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 144.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 144.3
Samples: 1

Max nTPM: 144.3
Min nTPM: 144.3
Sample A 144.3
Midbrain
nTPM: 137.8
Samples: 1

Max nTPM: 137.8
Min nTPM: 137.8
Sample A 137.8
Superior colliculi
nTPM: 142.4
Samples: 1

Max nTPM: 142.4
Min nTPM: 142.4
Sample A 142.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 91.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.2
Samples: 3

Max nTPM: 102.0
Min nTPM: 69.5
Sample A Female 102.0
Sample B Female 69.5
Sample C Male 75.1
Midbrain
nTPM: 77.5
Samples: 3

Max nTPM: 81.4
Min nTPM: 73.9
Sample B Female 81.4
Sample C Male 77.3
Sample D Male 73.9
Periaqueductal gray
nTPM: 67.4
Samples: 3

Max nTPM: 71.5
Min nTPM: 62.8
Sample B Female 71.5
Sample C Male 67.8
Sample D Male 62.8
Superior colliculi
nTPM: 91.3
Samples: 4

Max nTPM: 99.1
Min nTPM: 76.5
Sample A Female 99.1
Sample B Female 98.2
Sample C Male 91.3
Sample D Male 76.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 57.1
Min nTPM: 51.2
Sample A 54.7
Sample B 56.7
Sample C 51.2
Sample D 57.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 124.9
Rat sample Sample description nTPM
Midbrain
nTPM: 124.9
Samples: 4

Max nTPM: 132.2
Min nTPM: 120.3
Sample A 126.6
Sample A 132.2
Sample A 120.7
Sample A 120.3

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