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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:41.5 nTPM
HPA Brain:37.4 nTPM
GTEx:41.5 nTPM
FANTOM5:126.1 Scaled Tags Per Million
Pig:53.4 nTPM
Mouse:52.0 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.4
Sample id Sample description nTPM
Amygdala
nTPM: 35.6
2814 Male, age 76, right hemisphere 48.7
2517 Female, age 94, left hemisphere 36.4
1987 Female, age 91, left hemisphere 32.5
2514 Male, age 75, right hemisphere 32.0
2695 Female, age 67, right hemisphere 28.5
Basal amygdala
nTPM: 33.0
1955 Male, age 76, both hemispheres 41.6
2685 Female, age 94, left hemisphere 36.9
2609 Male, age 75, right hemisphere 34.8
2243 Female, age 91, right hemisphere 32.0
2110 Male, age 80, left hemisphere 30.2
2827 Female, age 67, right hemisphere 22.7
Central amygdala
nTPM: 37.1
2826 Female, age 94, left hemisphere 48.9
1905 Male, age 76, both hemispheres 43.8
2515 Male, age 75, right hemisphere 33.9
2239 Male, age 80, left hemisphere 31.2
2701 Female, age 91, right hemisphere 27.6
Corticomedial amygdala
nTPM: 37.4
2429 Female, age 94, left hemisphere 45.0
2829 Male, age 80, left hemisphere 43.7
2240 Male, age 76, both hemispheres 41.3
2428 Male, age 75, right hemisphere 36.6
2535 Female, age 67, right hemisphere 31.2
2242 Female, age 91, right hemisphere 26.6
Lateral amygdala
nTPM: 33.6
2534 Female, age 94, left hemisphere 55.4
1883 Male, age 76, both hemispheres 41.4
2516 Male, age 75, right hemisphere 31.6
2256 Male, age 80, left hemisphere 30.9
2830 Female, age 67, right hemisphere 24.5
2255 Female, age 91, right hemisphere 17.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 41.5
Samples: 181

Max nTPM: 108.8
Min nTPM: 15.8
Std nTPM: 16.3
Median nTPM: 37.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 108.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 102.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 90.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 89.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 84.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 77.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 75.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 75.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 73.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 73.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 71.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 67.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 65.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 65.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 63.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 62.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 60.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 59.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 59.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 59.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 59.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 59.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 58.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 58.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 58.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 57.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 57.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 57.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 56.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 54.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 54.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 54.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 53.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 53.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 53.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 52.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 52.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 51.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 51.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 51.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 51.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 51.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 50.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 50.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 49.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 49.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 49.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 48.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 48.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 48.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 47.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 46.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 45.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 45.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 45.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 44.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 44.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 44.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 44.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 44.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 44.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 44.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 44.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 43.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 43.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 43.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 42.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 42.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 42.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 41.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 41.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 41.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 41.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 40.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 39.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 39.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 39.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 39.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 38.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 38.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 37.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 37.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 37.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 37.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 37.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 37.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 37.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 37.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 37.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 37.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 37.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 36.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 36.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 36.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 36.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 36.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 36.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 35.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 35.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 35.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 35.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 34.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 34.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 34.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 34.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 33.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 33.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 33.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 33.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 33.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 32.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 32.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 32.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 32.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 32.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 32.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 32.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 31.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 31.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 31.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 30.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 30.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 30.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 29.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 29.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 29.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 29.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 28.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 28.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 28.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 28.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 28.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 28.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 28.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 28.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 28.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 27.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 27.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 26.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 26.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 26.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 26.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 25.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 25.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 25.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 25.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 25.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 25.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 24.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 24.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 24.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 24.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 24.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 24.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 24.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 24.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 24.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 23.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 22.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 22.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 22.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 22.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 22.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 21.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 21.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 21.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 21.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 21.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 20.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 19.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 18.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 18.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 15.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

126.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 126.1
FF:10151-102I7 76 years, female 126.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.4
Pig sample Sample description nTPM
Amygdala
nTPM: 53.4
Samples: 4

Max nTPM: 68.0
Min nTPM: 41.2
Sample A Female 68.0
Sample B Female 50.6
Sample C Male 41.2
Sample D Male 53.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 52.0
Samples: 4

Max nTPM: 58.5
Min nTPM: 46.4
Sample A Male 58.5
Sample B Male 46.4
Sample C Female 50.2
Sample D Female 52.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
75259443 Antisense, RP_051214_04_D06, Mouse strain C57BL/6J (56 days, male) 0.8
75259495 Antisense, RP_051214_04_D06, Mouse strain C57BL/6J (56 days, male) 0.8

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