MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA Brain:48.2 nTPM
GTEx:26.1 nTPM
FANTOM5:1.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.9
2219 Male, age 76, both hemispheres 44.9
2586 Male, age 75, left hemisphere 42.8
2666 Male, age 74, left hemisphere 37.6
1827 Male, age 72, unknown 33.1
2411 Female, age 72, unknown 31.9
1833 Male, age 53, unknown 29.4
1870 Female, age 42, unknown 28.4
2828 Female, age 72, unknown 28.4
1830 Male, age 51, unknown 25.2
2019 Male, age 18, unknown 17.6
Dorsal raphe nucleus
nTPM: 34.9
2298 Female, age 72, unknown 41.7
2047 Male, age 72, unknown 40.4
2750 Male, age 76, both hemispheres 34.3
1828 Male, age 53, unknown 33.2
2016 Female, age 72, unknown 24.7
Inferior colliculus
nTPM: 24.0
2849 Male, age 72, unknown 31.4
1848 Female, age 42, unknown 26.6
1890 Male, age 53, unknown 19.9
2097 Female, age 72, unknown 18.1
Median raphe nucleus
nTPM: 45.8
2220 Male, age 76, midline 45.8
Periaquaductal grey, anterior
nTPM: 43.6
2502 Female, age 75, unknown 54.1
1947 Male, age 18, unknown 39.0
1795 Male, age 51, unknown 37.6
Periaquaductal grey, dorsal
nTPM: 30.6
1840 Male, age 53, unknown 42.3
2850 Male, age 76, both hemispheres 31.0
2464 Female, age 72, unknown 26.0
1831 Male, age 72, unknown 23.0
Periaquaductal grey, lateral
nTPM: 22.1
2140 Male, age 76, both hemispheres 26.4
2053 Male, age 18, unknown 25.6
2272 Male, age 74, both hemispheres 14.3
Pretectal area
nTPM: 28.4
2825 Male, age 18, unknown 35.8
1816 Male, age 51, unknown 35.2
1944 Female, age 72, unknown 34.2
2224 Female, age 72, unknown 32.6
2007 Male, age 72, unknown 31.9
1817 Female, age 42, unknown 29.6
1815 Male, age 53, unknown 29.2
2667 Female, age 75, unknown 29.2
2407 Male, age 75, both hemispheres 22.1
2316 Male, age 76, right hemisphere 19.4
2273 Male, age 74, both hemispheres 13.2
Red nucleus
nTPM: 16.4
2584 Male, age 75, left hemisphere 32.4
2769 Male, age 72, unknown 18.3
2785 Male, age 18, unknown 17.5
2227 Male, age 72, unknown 17.0
2588 Male, age 74, left hemisphere 16.5
2725 Female, age 75, unknown 16.2
1821 Female, age 72, unknown 15.0
1954 Female, age 42, unknown 14.5
1904 Male, age 53, unknown 12.8
2823 Male, age 76, right hemisphere 12.7
2503 Female, age 72, unknown 12.3
1865 Male, age 51, unknown 11.9
Substantia nigra
nTPM: 48.2
2665 Male, age 74, both hemispheres 97.2
1916 Female, age 42, unknown 65.7
1851 Male, age 51, unknown 56.3
1941 Male, age 53, unknown 48.8
2241 Male, age 72, unknown 46.2
2699 Male, age 18, unknown 44.9
2409 Female, age 72, unknown 37.1
1889 Female, age 72, unknown 32.9
2583 Male, age 75, right hemisphere 26.8
2590 Female, age 75, unknown 26.6
Superior colliculus
nTPM: 27.3
2664 Male, age 75, both hemispheres 37.9
2668 Female, age 75, unknown 32.1
1796 Male, age 53, unknown 31.9
2087 Female, age 72, unknown 30.7
1839 Male, age 51, unknown 30.3
2261 Male, age 18, unknown 29.3
1895 Male, age 76, right hemisphere 28.3
2587 Male, age 74, left hemisphere 24.0
1913 Female, age 42, unknown 15.5
1995 Male, age 72, unknown 13.4
Ventral tegmental area
nTPM: 40.0
2218 Male, age 76, both hemispheres 52.2
2410 Female, age 72, unknown 47.0
1915 Female, age 42, unknown 46.5
1942 Male, age 51, unknown 38.2
2021 Male, age 53, unknown 30.4
2223 Female, age 72, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 183

Max nTPM: 99.4
Min nTPM: 1.1
Std nTPM: 21.5
Median nTPM: 19.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 99.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 87.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 71.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 69.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 69.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 69.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 68.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 67.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

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