MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.7 nTPM
HPA Brain:47.1 nTPM
GTEx:58.7 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:68.2 nTPM
Mouse:79.8 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2586 Male, age 75, left hemisphere 45.0
2019 Male, age 18, unknown 41.5
2219 Male, age 76, both hemispheres 36.4
1833 Male, age 53, unknown 35.3
2411 Female, age 72, unknown 34.7
2828 Female, age 72, unknown 33.6
1870 Female, age 42, unknown 33.1
1827 Male, age 72, unknown 33.0
2666 Male, age 74, left hemisphere 32.1
1830 Male, age 51, unknown 31.2
Dorsal raphe nucleus
nTPM: 38.3
2298 Female, age 72, unknown 44.2
2016 Female, age 72, unknown 40.5
1828 Male, age 53, unknown 40.3
2047 Male, age 72, unknown 35.8
2750 Male, age 76, both hemispheres 30.7
Inferior colliculus
nTPM: 41.9
2097 Female, age 72, unknown 50.6
1890 Male, age 53, unknown 43.7
1848 Female, age 42, unknown 38.0
2849 Male, age 72, unknown 35.3
Median raphe nucleus
nTPM: 32.2
2220 Male, age 76, midline 32.2
Periaquaductal grey, anterior
nTPM: 36.8
2502 Female, age 75, unknown 41.8
1795 Male, age 51, unknown 39.0
1947 Male, age 18, unknown 29.7
Periaquaductal grey, dorsal
nTPM: 40.8
1840 Male, age 53, unknown 41.9
2464 Female, age 72, unknown 41.7
2850 Male, age 76, both hemispheres 40.1
1831 Male, age 72, unknown 39.6
Periaquaductal grey, lateral
nTPM: 34.3
2272 Male, age 74, both hemispheres 35.6
2053 Male, age 18, unknown 33.9
2140 Male, age 76, both hemispheres 33.3
Pretectal area
nTPM: 39.6
1816 Male, age 51, unknown 46.9
1944 Female, age 72, unknown 46.8
1817 Female, age 42, unknown 45.7
1815 Male, age 53, unknown 44.5
2007 Male, age 72, unknown 43.7
2273 Male, age 74, both hemispheres 40.4
2224 Female, age 72, unknown 38.6
2667 Female, age 75, unknown 37.1
2825 Male, age 18, unknown 34.9
2407 Male, age 75, both hemispheres 28.9
2316 Male, age 76, right hemisphere 27.7
Red nucleus
nTPM: 36.3
1821 Female, age 72, unknown 41.9
1954 Female, age 42, unknown 40.0
2503 Female, age 72, unknown 39.1
1904 Male, age 53, unknown 38.4
2785 Male, age 18, unknown 37.2
2227 Male, age 72, unknown 36.3
1865 Male, age 51, unknown 36.2
2725 Female, age 75, unknown 35.8
2769 Male, age 72, unknown 33.4
2584 Male, age 75, left hemisphere 32.9
2588 Male, age 74, left hemisphere 32.6
2823 Male, age 76, right hemisphere 31.7
Substantia nigra
nTPM: 47.1
2409 Female, age 72, unknown 61.7
1916 Female, age 42, unknown 55.4
2241 Male, age 72, unknown 51.3
1889 Female, age 72, unknown 50.9
2699 Male, age 18, unknown 49.1
1851 Male, age 51, unknown 46.6
2665 Male, age 74, both hemispheres 42.0
2590 Female, age 75, unknown 40.9
2583 Male, age 75, right hemisphere 37.5
1941 Male, age 53, unknown 35.2
Superior colliculus
nTPM: 39.0
1995 Male, age 72, unknown 46.5
2087 Female, age 72, unknown 42.8
2261 Male, age 18, unknown 42.0
2587 Male, age 74, left hemisphere 40.7
2668 Female, age 75, unknown 40.7
1796 Male, age 53, unknown 39.7
2664 Male, age 75, both hemispheres 39.7
1913 Female, age 42, unknown 36.6
1839 Male, age 51, unknown 32.6
1895 Male, age 76, right hemisphere 29.1
Ventral tegmental area
nTPM: 41.2
2410 Female, age 72, unknown 45.5
1915 Female, age 42, unknown 43.8
1942 Male, age 51, unknown 42.6
2223 Female, age 72, unknown 38.5
2218 Male, age 76, both hemispheres 38.4
2021 Male, age 53, unknown 38.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.7
Samples: 183

Max nTPM: 112.3
Min nTPM: 24.2
Std nTPM: 16.3
Median nTPM: 55.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 112.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 112.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 111.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 98.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 97.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 96.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 95.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 92.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 91.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 89.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.8
FF:10158-103A5 76 years, female 69.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.7
Samples: 4

Max nTPM: 75.5
Min nTPM: 54.9
Sample A Female 75.5
Sample B Female 63.4
Sample C Male 57.1
Sample D Male 54.9
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 68.6
Min nTPM: 53.3
Sample A Female 68.6
Sample B Female 61.6
Sample C Male 65.7
Sample D Male 53.3
Periaqueductal gray
nTPM: 51.8
Samples: 3

Max nTPM: 54.7
Min nTPM: 47.4
Sample B Female 54.7
Sample C Male 53.4
Sample D Male 47.4
Superior colliculi
nTPM: 68.2
Samples: 4

Max nTPM: 79.2
Min nTPM: 59.5
Sample A Female 70.1
Sample B Female 64.1
Sample C Male 79.2
Sample D Male 59.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 79.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.9
Samples: 4

Max nTPM: 84.0
Min nTPM: 75.5
Sample A Male 75.5
Sample B Male 78.6
Sample C Female 81.3
Sample D Female 84.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69838751 Antisense, RP_050321_04_F06, Mouse strain C57BL/6J (56 days, male) 0.9

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