MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA Brain:27.0 nTPM
GTEx:11.4 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:27.4 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.5
1870 Female, age 42, unknown 28.0
2666 Male, age 74, left hemisphere 28.0
2586 Male, age 75, left hemisphere 27.6
1827 Male, age 72, unknown 26.2
2828 Female, age 72, unknown 23.7
1833 Male, age 53, unknown 23.2
2411 Female, age 72, unknown 23.2
1830 Male, age 51, unknown 22.8
2019 Male, age 18, unknown 21.7
2219 Male, age 76, both hemispheres 20.8
Dorsal raphe nucleus
nTPM: 23.1
2298 Female, age 72, unknown 26.5
2016 Female, age 72, unknown 23.0
2047 Male, age 72, unknown 22.6
1828 Male, age 53, unknown 22.2
2750 Male, age 76, both hemispheres 21.3
Inferior colliculus
nTPM: 24.7
2097 Female, age 72, unknown 28.5
1848 Female, age 42, unknown 24.8
1890 Male, age 53, unknown 23.6
2849 Male, age 72, unknown 22.0
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Periaquaductal grey, anterior
nTPM: 26.1
1947 Male, age 18, unknown 27.0
2502 Female, age 75, unknown 26.8
1795 Male, age 51, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 23.0
1831 Male, age 72, unknown 26.5
1840 Male, age 53, unknown 23.4
2464 Female, age 72, unknown 22.1
2850 Male, age 76, both hemispheres 20.0
Periaquaductal grey, lateral
nTPM: 22.2
2140 Male, age 76, both hemispheres 22.8
2053 Male, age 18, unknown 21.9
2272 Male, age 74, both hemispheres 21.8
Pretectal area
nTPM: 23.3
1817 Female, age 42, unknown 27.1
1944 Female, age 72, unknown 26.4
1816 Male, age 51, unknown 26.2
2007 Male, age 72, unknown 25.7
1815 Male, age 53, unknown 24.5
2224 Female, age 72, unknown 24.3
2273 Male, age 74, both hemispheres 23.5
2667 Female, age 75, unknown 22.5
2316 Male, age 76, right hemisphere 21.3
2825 Male, age 18, unknown 19.8
2407 Male, age 75, both hemispheres 14.6
Red nucleus
nTPM: 25.8
2588 Male, age 74, left hemisphere 29.5
2503 Female, age 72, unknown 27.8
1904 Male, age 53, unknown 27.7
1821 Female, age 72, unknown 27.1
1954 Female, age 42, unknown 26.3
2769 Male, age 72, unknown 25.9
2227 Male, age 72, unknown 25.7
1865 Male, age 51, unknown 25.5
2785 Male, age 18, unknown 24.6
2823 Male, age 76, right hemisphere 23.9
2584 Male, age 75, left hemisphere 23.3
2725 Female, age 75, unknown 22.1
Substantia nigra
nTPM: 22.8
2583 Male, age 75, right hemisphere 28.1
1889 Female, age 72, unknown 26.5
2665 Male, age 74, both hemispheres 25.5
2699 Male, age 18, unknown 25.2
1851 Male, age 51, unknown 24.6
2590 Female, age 75, unknown 24.4
1916 Female, age 42, unknown 23.8
1941 Male, age 53, unknown 23.3
2241 Male, age 72, unknown 18.3
2409 Female, age 72, unknown 8.1
Superior colliculus
nTPM: 24.8
2261 Male, age 18, unknown 28.5
1839 Male, age 51, unknown 26.4
1895 Male, age 76, right hemisphere 26.2
2087 Female, age 72, unknown 25.9
2668 Female, age 75, unknown 25.7
1913 Female, age 42, unknown 24.9
1796 Male, age 53, unknown 24.7
1995 Male, age 72, unknown 24.0
2664 Male, age 75, both hemispheres 22.1
2587 Male, age 74, left hemisphere 19.9
Ventral tegmental area
nTPM: 23.3
2218 Male, age 76, both hemispheres 28.7
2410 Female, age 72, unknown 25.3
1915 Female, age 42, unknown 23.6
2223 Female, age 72, unknown 22.2
2021 Male, age 53, unknown 21.0
1942 Male, age 51, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.4
Samples: 183

Max nTPM: 25.5
Min nTPM: 4.5
Std nTPM: 3.2
Median nTPM: 11.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 25.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 24.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 21.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 21.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 20.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.4
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 18.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 16.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 16.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 15.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.0
FF:10158-103A5 76 years, female 71.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.5
Samples: 4

Max nTPM: 22.7
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 20.7
Sample C Male 19.8
Sample D Male 22.7
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 19.2
Min nTPM: 16.2
Sample A Female 18.3
Sample B Female 19.2
Sample C Male 16.2
Sample D Male 18.4
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 21.4
Min nTPM: 18.1
Sample B Female 18.3
Sample C Male 21.4
Sample D Male 18.1
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.1
Sample A Female 15.7
Sample B Female 14.1
Sample C Male 15.4
Sample D Male 19.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 29.4
Min nTPM: 24.2
Sample A Male 28.2
Sample B Male 29.4
Sample C Female 27.8
Sample D Female 24.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
77925743 Antisense, RP_070219_02_C02, Mouse strain C57BL/6J (56 days, male) 0.9

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