A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
93.7
nTPM
Monaco:
11.9
nTPM
Schmiedel:
23.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.7
HPA sample
nTPM
NK-cell nTPM: 93.7
Samples: 6
Max nTPM: 131.8
Min nTPM: 46.4
P10809_1013
46.4
P10809_1033
100.6
P10809_1052
73.5
P10809_1071
113.7
P10809_1093
131.8
P10809_1103
96.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
Monaco sample
nTPM
NK-cell nTPM: 11.9
Samples: 4
Max nTPM: 17.5
Min nTPM: 8.1
RHH5316_R3683
17.5
RHH5224_R3596
8.1
RHH5253_R3625
8.3
RHH5282_R3654
13.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.7
Schmiedel sample id
TPM
NK-cell TPM: 23.7
Samples: 90
Max TPM: 33.1
Min TPM: 13.8
NK_1
33.1
NK_2
30.3
NK_3
30.0
NK_4
29.8
NK_5
29.4
NK_6
28.6
NK_7
28.1
NK_8
28.0
NK_9
28.0
NK_10
27.8
NK_11
27.8
NK_12
27.7
NK_13
27.7
NK_14
27.6
NK_15
27.5
NK_16
27.4
NK_17
27.4
NK_18
27.4
NK_19
27.2
NK_20
27.2
NK_21
27.2
NK_22
26.8
NK_23
26.8
NK_24
26.4
NK_25
25.9
NK_26
25.8
NK_27
25.7
NK_28
25.5
NK_29
25.3
NK_30
25.3
NK_31
25.3
NK_32
25.2
NK_33
25.1
NK_34
25.0
NK_35
25.0
NK_36
24.7
NK_37
24.5
NK_38
24.4
NK_39
24.3
NK_40
24.2
NK_41
24.1
NK_42
24.0
NK_43
24.0
NK_44
24.0
NK_45
23.9
NK_46
23.8
NK_47
23.8
NK_48
23.7
NK_49
23.7
NK_50
23.7
NK_51
23.6
NK_52
23.6
NK_53
23.5
NK_54
23.5
NK_55
23.0
NK_56
22.9
NK_57
22.8
NK_58
22.4
NK_59
22.2
NK_60
22.1
NK_61
21.7
NK_62
21.7
NK_63
21.6
NK_64
21.3
NK_65
21.1
NK_66
20.9
NK_67
20.8
NK_68
20.6
NK_69
20.6
NK_70
20.6
NK_71
20.5
NK_72
20.5
NK_73
20.4
NK_74
20.3
NK_75
20.3
NK_76
20.3
NK_77
20.0
NK_78
19.9
NK_79
19.7
NK_80
19.6
NK_81
19.4
NK_82
19.1
NK_83
18.4
NK_84
17.6
NK_85
17.4
NK_86
17.3
NK_87
17.0
NK_88
16.4
NK_89
16.3
NK_90
13.8
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