A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
123.0
nTPM
Monaco:
24.8
nTPM
Schmiedel:
23.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.0
HPA sample
nTPM
Classical monocyte nTPM: 113.3
Samples: 6
Max nTPM: 171.9
Min nTPM: 66.6
P10809_1003
66.6
P10809_1020
115.8
P10809_1039
171.9
P10809_1058
107.2
P10809_1080
90.3
P10809_1107
128.3
Intermediate monocyte nTPM: 123.0
Samples: 6
Max nTPM: 178.0
Min nTPM: 79.5
P10809_1004
79.5
P10809_1023
129.8
P10809_1042
123.0
P10809_1061
125.7
P10809_1081
102.0
P10809_1108
178.0
Non-classical monocyte nTPM: 114.8
Samples: 5
Max nTPM: 151.9
Min nTPM: 85.6
P10809_1005
85.6
P10809_1053
127.5
P10809_1072
111.0
P10809_1082
97.8
P10809_1109
151.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.8
Monaco sample
nTPM
Classical monocyte nTPM: 17.4
Samples: 4
Max nTPM: 27.8
Min nTPM: 7.5
RHH5313_R3680
27.8
RHH5221_R3593
14.1
RHH5250_R3622
7.5
RHH5279_R3651
20.0
Intermediate monocyte nTPM: 24.9
Samples: 4
Max nTPM: 29.2
Min nTPM: 20.8
RHH5314_R3681
27.2
RHH5222_R3594
29.2
RHH5251_R3623
20.8
RHH5280_R3652
22.2
Non-classical monocyte nTPM: 20.1
Samples: 4
Max nTPM: 30.8
Min nTPM: 11.0
RHH5315_R3682
30.8
RHH5223_R3595
19.1
RHH5252_R3624
19.5
RHH5281_R3653
11.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
Schmiedel sample id
TPM
Classical monocyte TPM: 22.2
Samples: 91
Max TPM: 30.7
Min TPM: 14.9
MONOCYTES_1
30.7
MONOCYTES_2
28.0
MONOCYTES_3
27.5
MONOCYTES_4
27.4
MONOCYTES_5
27.2
MONOCYTES_6
26.9
MONOCYTES_7
26.7
MONOCYTES_8
26.7
MONOCYTES_9
26.6
MONOCYTES_10
26.5
MONOCYTES_11
26.1
MONOCYTES_12
26.1
MONOCYTES_13
26.1
MONOCYTES_14
25.7
MONOCYTES_15
25.3
MONOCYTES_16
25.3
MONOCYTES_17
25.2
MONOCYTES_18
25.0
MONOCYTES_19
24.9
MONOCYTES_20
24.9
MONOCYTES_21
24.4
MONOCYTES_22
24.4
MONOCYTES_23
24.4
MONOCYTES_24
24.3
MONOCYTES_25
24.2
MONOCYTES_26
24.0
MONOCYTES_27
24.0
MONOCYTES_28
23.9
MONOCYTES_29
23.9
MONOCYTES_30
23.9
MONOCYTES_31
23.9
MONOCYTES_32
23.8
MONOCYTES_33
23.6
MONOCYTES_34
23.5
MONOCYTES_35
23.5
MONOCYTES_36
23.4
MONOCYTES_37
23.4
MONOCYTES_38
23.3
MONOCYTES_39
23.3
MONOCYTES_40
23.0
MONOCYTES_41
23.0
MONOCYTES_42
22.9
MONOCYTES_43
22.6
MONOCYTES_44
22.5
MONOCYTES_45
22.5
MONOCYTES_46
22.3
MONOCYTES_47
22.3
MONOCYTES_48
22.3
MONOCYTES_49
22.3
MONOCYTES_50
22.2
MONOCYTES_51
22.2
MONOCYTES_52
22.2
MONOCYTES_53
22.2
MONOCYTES_54
22.1
MONOCYTES_55
21.8
MONOCYTES_56
21.6
MONOCYTES_57
21.5
MONOCYTES_58
21.5
MONOCYTES_59
21.5
MONOCYTES_60
21.3
MONOCYTES_61
21.2
MONOCYTES_62
21.2
MONOCYTES_63
20.8
MONOCYTES_64
20.7
MONOCYTES_65
20.3
MONOCYTES_66
20.1
MONOCYTES_67
20.0
MONOCYTES_68
19.9
MONOCYTES_69
19.8
MONOCYTES_70
19.8
MONOCYTES_71
19.4
MONOCYTES_72
19.4
MONOCYTES_73
19.4
MONOCYTES_74
19.3
MONOCYTES_75
19.3
MONOCYTES_76
19.2
MONOCYTES_77
19.2
MONOCYTES_78
18.9
MONOCYTES_79
18.0
MONOCYTES_80
17.9
MONOCYTES_81
17.7
MONOCYTES_82
17.6
MONOCYTES_83
17.3
MONOCYTES_84
17.2
MONOCYTES_85
17.2
MONOCYTES_86
17.1
MONOCYTES_87
16.9
MONOCYTES_88
16.8
MONOCYTES_89
15.2
MONOCYTES_90
15.0
MONOCYTES_91
14.9
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Non-classical monocyte TPM: 23.1
Samples: 90
Max TPM: 34.2
Min TPM: 14.4
M2_1
34.2
M2_2
29.0
M2_3
28.9
M2_4
28.5
M2_5
28.0
M2_6
28.0
M2_7
27.9
M2_8
27.8
M2_9
27.8
M2_10
27.3
M2_11
27.0
M2_12
26.9
M2_13
26.9
M2_14
26.5
M2_15
26.5
M2_16
26.3
M2_17
26.2
M2_18
26.1
M2_19
25.9
M2_20
25.9
M2_21
25.9
M2_22
25.8
M2_23
25.3
M2_24
25.1
M2_25
25.1
M2_26
25.1
M2_27
25.0
M2_28
25.0
M2_29
25.0
M2_30
24.9
M2_31
24.8
M2_32
24.8
M2_33
24.7
M2_34
24.6
M2_35
24.4
M2_36
24.3
M2_37
24.3
M2_38
24.3
M2_39
24.2
M2_40
24.0
M2_41
23.9
M2_42
23.8
M2_43
23.8
M2_44
23.4
M2_45
23.3
M2_46
22.9
M2_47
22.6
M2_48
22.6
M2_49
22.5
M2_50
22.4
M2_51
22.3
M2_52
22.2
M2_53
22.2
M2_54
22.1
M2_55
21.9
M2_56
21.9
M2_57
21.9
M2_58
21.9
M2_59
21.8
M2_60
21.7
M2_61
21.6
M2_62
21.6
M2_63
21.5
M2_64
21.2
M2_65
21.1
M2_66
21.1
M2_67
21.0
M2_68
20.9
M2_69
20.8
M2_70
20.8
M2_71
20.6
M2_72
20.2
M2_73
20.2
M2_74
20.2
M2_75
20.1
M2_76
20.0
M2_77
19.7
M2_78
19.7
M2_79
19.4
M2_80
19.4
M2_81
19.3
M2_82
18.5
M2_83
18.3
M2_84
17.9
M2_85
17.8
M2_86
17.0
M2_87
16.9
M2_88
16.0
M2_89
15.8
M2_90
14.4
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