MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:45.8 nTPM
GTEx:16.7 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:5.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.0
2586 Male, age 75, left hemisphere 52.8
2828 Female, age 72, unknown 38.9
2219 Male, age 76, both hemispheres 36.8
2666 Male, age 74, left hemisphere 32.6
1827 Male, age 72, unknown 31.7
1870 Female, age 42, unknown 30.2
2411 Female, age 72, unknown 29.3
1833 Male, age 53, unknown 28.7
1830 Male, age 51, unknown 26.7
2019 Male, age 18, unknown 22.5
Dorsal raphe nucleus
nTPM: 36.3
2016 Female, age 72, unknown 44.4
1828 Male, age 53, unknown 37.8
2047 Male, age 72, unknown 37.1
2298 Female, age 72, unknown 35.6
2750 Male, age 76, both hemispheres 26.8
Inferior colliculus
nTPM: 34.8
1848 Female, age 42, unknown 36.2
1890 Male, age 53, unknown 35.2
2849 Male, age 72, unknown 34.8
2097 Female, age 72, unknown 33.2
Median raphe nucleus
nTPM: 25.1
2220 Male, age 76, midline 25.1
Periaquaductal grey, anterior
nTPM: 35.5
2502 Female, age 75, unknown 36.3
1947 Male, age 18, unknown 35.2
1795 Male, age 51, unknown 35.0
Periaquaductal grey, dorsal
nTPM: 38.0
1840 Male, age 53, unknown 47.5
2464 Female, age 72, unknown 35.9
1831 Male, age 72, unknown 34.6
2850 Male, age 76, both hemispheres 33.8
Periaquaductal grey, lateral
nTPM: 34.9
2053 Male, age 18, unknown 41.3
2140 Male, age 76, both hemispheres 36.1
2272 Male, age 74, both hemispheres 27.2
Pretectal area
nTPM: 35.0
1816 Male, age 51, unknown 41.6
1944 Female, age 72, unknown 40.4
1815 Male, age 53, unknown 39.1
2667 Female, age 75, unknown 36.8
1817 Female, age 42, unknown 36.3
2825 Male, age 18, unknown 34.8
2007 Male, age 72, unknown 34.5
2224 Female, age 72, unknown 34.5
2273 Male, age 74, both hemispheres 29.8
2316 Male, age 76, right hemisphere 29.6
2407 Male, age 75, both hemispheres 28.1
Red nucleus
nTPM: 32.0
2503 Female, age 72, unknown 37.3
1821 Female, age 72, unknown 35.5
2725 Female, age 75, unknown 33.9
2823 Male, age 76, right hemisphere 33.4
1954 Female, age 42, unknown 33.2
2588 Male, age 74, left hemisphere 32.2
1904 Male, age 53, unknown 31.6
2227 Male, age 72, unknown 30.9
2769 Male, age 72, unknown 30.9
1865 Male, age 51, unknown 30.6
2584 Male, age 75, left hemisphere 30.1
2785 Male, age 18, unknown 24.7
Substantia nigra
nTPM: 45.8
2699 Male, age 18, unknown 62.2
1916 Female, age 42, unknown 59.7
1851 Male, age 51, unknown 49.2
2241 Male, age 72, unknown 48.9
2665 Male, age 74, both hemispheres 47.7
2409 Female, age 72, unknown 43.9
2583 Male, age 75, right hemisphere 40.4
1889 Female, age 72, unknown 37.5
2590 Female, age 75, unknown 37.4
1941 Male, age 53, unknown 31.2
Superior colliculus
nTPM: 33.8
2087 Female, age 72, unknown 39.6
2664 Male, age 75, both hemispheres 38.1
1796 Male, age 53, unknown 37.1
2261 Male, age 18, unknown 37.0
1995 Male, age 72, unknown 35.1
2668 Female, age 75, unknown 35.0
1839 Male, age 51, unknown 31.0
2587 Male, age 74, left hemisphere 30.6
1913 Female, age 42, unknown 29.2
1895 Male, age 76, right hemisphere 24.9
Ventral tegmental area
nTPM: 38.2
1915 Female, age 42, unknown 45.4
1942 Male, age 51, unknown 39.8
2410 Female, age 72, unknown 37.7
2021 Male, age 53, unknown 36.9
2218 Male, age 76, both hemispheres 36.3
2223 Female, age 72, unknown 32.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 183

Max nTPM: 55.8
Min nTPM: 1.8
Std nTPM: 7.9
Median nTPM: 14.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 55.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 55.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 44.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 36.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 36.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 35.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 34.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 33.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.4
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 27.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 27.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.9
FF:10158-103A5 76 years, female 19.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.9
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.7
Sample A Female 8.2
Sample B Female 11.6
Sample C Male 7.9
Sample D Male 7.7
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 29.7
Min nTPM: 6.5
Sample A Female 12.0
Sample B Female 7.6
Sample C Male 29.7
Sample D Male 6.5
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 12.3
Min nTPM: 7.6
Sample B Female 7.6
Sample C Male 9.9
Sample D Male 12.3
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 27.6
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 27.6
Sample C Male 21.9
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 7.7
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 5.3
Sample C Female 7.7
Sample D Female 6.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69752017 Antisense, RP_050503_04_H10, Mouse strain C57BL/6J (56 days, male) 0.4
73994720 Antisense, RP_051214_03_F01, Mouse strain C57BL/6J (56 days, male) 0.1

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