MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:59.3 nTPM
GTEx:25.5 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:71.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.9
2411 Female, age 72, unknown 60.0
2586 Male, age 75, left hemisphere 55.6
2219 Male, age 76, both hemispheres 53.2
1827 Male, age 72, unknown 52.3
2019 Male, age 18, unknown 49.8
2666 Male, age 74, left hemisphere 48.5
2828 Female, age 72, unknown 45.2
1833 Male, age 53, unknown 40.6
1870 Female, age 42, unknown 38.5
1830 Male, age 51, unknown 35.2
Dorsal raphe nucleus
nTPM: 57.4
2298 Female, age 72, unknown 72.3
2047 Male, age 72, unknown 66.3
1828 Male, age 53, unknown 62.3
2750 Male, age 76, both hemispheres 47.6
2016 Female, age 72, unknown 38.2
Inferior colliculus
nTPM: 56.5
2097 Female, age 72, unknown 74.4
1890 Male, age 53, unknown 57.1
1848 Female, age 42, unknown 49.8
2849 Male, age 72, unknown 45.0
Median raphe nucleus
nTPM: 59.3
2220 Male, age 76, midline 59.3
Periaquaductal grey, anterior
nTPM: 56.4
1947 Male, age 18, unknown 65.4
1795 Male, age 51, unknown 54.0
2502 Female, age 75, unknown 49.7
Periaquaductal grey, dorsal
nTPM: 46.6
2464 Female, age 72, unknown 51.5
1840 Male, age 53, unknown 48.8
1831 Male, age 72, unknown 47.3
2850 Male, age 76, both hemispheres 39.0
Periaquaductal grey, lateral
nTPM: 41.0
2272 Male, age 74, both hemispheres 44.7
2140 Male, age 76, both hemispheres 39.5
2053 Male, age 18, unknown 38.7
Pretectal area
nTPM: 53.8
1816 Male, age 51, unknown 73.5
1944 Female, age 72, unknown 72.6
2007 Male, age 72, unknown 69.6
1817 Female, age 42, unknown 64.6
2667 Female, age 75, unknown 60.0
1815 Male, age 53, unknown 49.3
2224 Female, age 72, unknown 48.3
2273 Male, age 74, both hemispheres 41.9
2825 Male, age 18, unknown 39.8
2316 Male, age 76, right hemisphere 39.0
2407 Male, age 75, both hemispheres 33.5
Red nucleus
nTPM: 43.3
1821 Female, age 72, unknown 56.2
2588 Male, age 74, left hemisphere 53.6
2725 Female, age 75, unknown 49.6
2785 Male, age 18, unknown 47.6
2823 Male, age 76, right hemisphere 45.7
2503 Female, age 72, unknown 42.7
2769 Male, age 72, unknown 41.4
2227 Male, age 72, unknown 41.3
1954 Female, age 42, unknown 39.2
1904 Male, age 53, unknown 35.8
1865 Male, age 51, unknown 35.3
2584 Male, age 75, left hemisphere 30.8
Substantia nigra
nTPM: 52.3
1916 Female, age 42, unknown 77.9
1941 Male, age 53, unknown 68.9
1889 Female, age 72, unknown 66.0
2241 Male, age 72, unknown 58.4
1851 Male, age 51, unknown 58.1
2409 Female, age 72, unknown 44.5
2665 Male, age 74, both hemispheres 43.1
2699 Male, age 18, unknown 41.6
2590 Female, age 75, unknown 37.4
2583 Male, age 75, right hemisphere 27.1
Superior colliculus
nTPM: 45.8
2087 Female, age 72, unknown 65.1
1895 Male, age 76, right hemisphere 56.0
2261 Male, age 18, unknown 53.7
2668 Female, age 75, unknown 50.0
1796 Male, age 53, unknown 48.1
2664 Male, age 75, both hemispheres 45.2
1839 Male, age 51, unknown 44.0
2587 Male, age 74, left hemisphere 38.3
1913 Female, age 42, unknown 30.0
1995 Male, age 72, unknown 27.8
Ventral tegmental area
nTPM: 52.5
1915 Female, age 42, unknown 64.2
2410 Female, age 72, unknown 64.0
2218 Male, age 76, both hemispheres 57.3
1942 Male, age 51, unknown 52.8
2021 Male, age 53, unknown 41.8
2223 Female, age 72, unknown 34.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 183

Max nTPM: 109.4
Min nTPM: 1.4
Std nTPM: 17.0
Median nTPM: 22.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 84.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 67.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 64.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 61.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 61.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 61.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 55.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 19.7
Min nTPM: 3.5
Sample A Female 19.7
Sample B Female 9.0
Sample C Male 19.0
Sample D Male 3.5
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 25.1
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 10.9
Sample C Male 25.1
Sample D Male 17.4
Periaqueductal gray
nTPM: 11.5
Samples: 3

Max nTPM: 14.1
Min nTPM: 9.4
Sample B Female 11.0
Sample C Male 14.1
Sample D Male 9.4
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 26.3
Min nTPM: 14.5
Sample A Female 18.9
Sample B Female 14.5
Sample C Male 26.3
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 72.8
Min nTPM: 67.5
Sample A Male 71.9
Sample B Male 67.5
Sample C Female 72.8
Sample D Female 72.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70725025 Antisense, RP_050705_03_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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