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  • STMN3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:86.5 nTPM
HPA Brain:202.3 nTPM
GTEx:86.5 nTPM
FANTOM5:259.9 Scaled Tags Per Million
Pig:202.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 172.8
2194 Female, age 79, both hemispheres 226.0
2565 Male, age 75, midline 176.6
1981 Female, age 72, midline 162.0
2816 Male, age 47, midline 158.9
2048 Male, age 55, midline 140.3
Cervical spinal cord, dorsal horn
nTPM: 202.3
2297 Male, age 75, both hemispheres 283.3
2721 Male, age 90, both hemispheres 279.4
1877 Male, age 55, unknown 219.7
2069 Male, age 47, both hemispheres 177.6
2173 Female, age 72, unknown 142.8
2296 Male, age 66, both hemispheres 111.0
Cervical spinal cord, ventral horn
nTPM: 183.4
2820 Female, age 79, both hemispheres 257.2
2068 Male, age 55, unknown 214.3
2480 Male, age 75, both hemispheres 206.7
2295 Male, age 66, both hemispheres 171.5
2809 Male, age 90, both hemispheres 146.2
2098 Female, age 72, unknown 104.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 86.5
Samples: 204

Max nTPM: 249.7
Min nTPM: 21.0
Std nTPM: 40.1
Median nTPM: 74.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 249.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 245.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 201.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 195.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 190.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 187.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 177.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 177.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 176.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 176.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 176.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 174.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 173.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 173.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 170.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 163.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 160.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 159.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 153.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 151.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 147.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 146.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 143.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 139.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 136.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 136.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 131.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 128.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 127.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 125.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 123.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 120.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 120.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 119.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 118.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 117.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 116.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 112.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 112.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 110.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 109.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 109.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 109.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 105.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 105.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 105.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 102.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 102.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 102.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 99.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 97.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 97.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 96.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 95.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 94.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 93.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 93.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 93.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 93.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 90.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 90.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 89.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 89.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 89.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 88.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 88.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 88.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 88.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 88.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 87.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 86.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 85.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 84.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 83.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 82.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 82.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 81.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 81.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 80.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 80.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 80.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 80.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 78.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 78.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 78.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 78.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 78.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 78.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 77.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 77.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 77.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 77.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 77.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 76.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 75.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 75.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 75.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 74.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 74.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 74.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 74.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 74.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 74.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 73.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 73.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 73.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 73.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 73.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 71.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 71.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 71.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 70.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 70.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 70.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 70.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 70.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 70.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 70.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 70.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 69.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 69.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 68.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 68.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 68.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 67.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 67.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 66.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 66.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 66.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 66.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 65.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 65.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 65.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 65.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 64.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 64.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 63.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 63.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 62.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 62.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 62.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 62.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 61.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 61.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 61.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 61.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 60.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 60.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 60.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 60.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 58.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 58.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 57.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 57.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 57.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 56.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 56.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 55.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 55.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 55.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 54.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 54.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 53.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 53.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 53.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 52.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 52.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 52.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 52.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 51.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 50.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 50.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 49.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 49.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 48.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 48.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 48.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 47.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 46.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 45.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 44.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 44.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 43.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 43.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 43.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 43.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 41.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 40.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 39.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 37.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 37.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 36.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 34.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 31.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 21.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

259.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 259.9
FF:10181-103D1 60 years, female 436.0
FF:10159-103A6 76 years, female 83.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 134.1
Samples: 4

Max nTPM: 229.6
Min nTPM: 51.5
Sample A Female 229.6
Sample B Female 71.9
Sample C Male 51.5
Sample D Male 183.4
Ventral spinal cord
nTPM: 202.8
Samples: 4

Max nTPM: 244.4
Min nTPM: 107.3
Sample A Female 219.8
Sample B Female 239.8
Sample C Male 244.4
Sample D Male 107.3

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