MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA Brain:81.7 nTPM
GTEx:36.3 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:38.3 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.0
2586 Male, age 75, left hemisphere 102.2
1827 Male, age 72, unknown 93.7
2666 Male, age 74, left hemisphere 82.3
2219 Male, age 76, both hemispheres 77.6
2828 Female, age 72, unknown 75.1
2411 Female, age 72, unknown 67.9
1870 Female, age 42, unknown 63.7
1833 Male, age 53, unknown 57.8
1830 Male, age 51, unknown 56.3
2019 Male, age 18, unknown 53.8
Dorsal raphe nucleus
nTPM: 71.3
2298 Female, age 72, unknown 83.5
2047 Male, age 72, unknown 78.9
1828 Male, age 53, unknown 68.6
2750 Male, age 76, both hemispheres 67.8
2016 Female, age 72, unknown 57.8
Inferior colliculus
nTPM: 63.2
2849 Male, age 72, unknown 67.0
2097 Female, age 72, unknown 63.9
1890 Male, age 53, unknown 61.7
1848 Female, age 42, unknown 60.3
Median raphe nucleus
nTPM: 78.8
2220 Male, age 76, midline 78.8
Periaquaductal grey, anterior
nTPM: 81.1
1795 Male, age 51, unknown 96.3
1947 Male, age 18, unknown 86.8
2502 Female, age 75, unknown 60.2
Periaquaductal grey, dorsal
nTPM: 65.2
1840 Male, age 53, unknown 82.3
2464 Female, age 72, unknown 62.0
1831 Male, age 72, unknown 59.0
2850 Male, age 76, both hemispheres 57.4
Periaquaductal grey, lateral
nTPM: 66.2
2053 Male, age 18, unknown 72.8
2272 Male, age 74, both hemispheres 63.5
2140 Male, age 76, both hemispheres 62.2
Pretectal area
nTPM: 78.4
1816 Male, age 51, unknown 99.9
1944 Female, age 72, unknown 88.7
2007 Male, age 72, unknown 88.5
2407 Male, age 75, both hemispheres 84.1
1817 Female, age 42, unknown 80.6
2667 Female, age 75, unknown 80.5
2224 Female, age 72, unknown 78.7
1815 Male, age 53, unknown 74.4
2825 Male, age 18, unknown 74.4
2273 Male, age 74, both hemispheres 57.8
2316 Male, age 76, right hemisphere 55.0
Red nucleus
nTPM: 51.1
2584 Male, age 75, left hemisphere 88.3
2588 Male, age 74, left hemisphere 63.5
2725 Female, age 75, unknown 61.9
2785 Male, age 18, unknown 54.7
2769 Male, age 72, unknown 46.5
2503 Female, age 72, unknown 45.6
2227 Male, age 72, unknown 44.8
1821 Female, age 72, unknown 44.3
1904 Male, age 53, unknown 44.3
2823 Male, age 76, right hemisphere 41.0
1954 Female, age 42, unknown 39.5
1865 Male, age 51, unknown 38.1
Substantia nigra
nTPM: 81.7
1916 Female, age 42, unknown 104.2
1851 Male, age 51, unknown 89.5
2583 Male, age 75, right hemisphere 89.2
2665 Male, age 74, both hemispheres 87.9
2241 Male, age 72, unknown 81.3
1889 Female, age 72, unknown 78.3
2409 Female, age 72, unknown 78.1
1941 Male, age 53, unknown 74.2
2590 Female, age 75, unknown 73.1
2699 Male, age 18, unknown 60.7
Superior colliculus
nTPM: 74.5
2261 Male, age 18, unknown 100.7
1796 Male, age 53, unknown 96.1
2664 Male, age 75, both hemispheres 91.8
2087 Female, age 72, unknown 82.6
2668 Female, age 75, unknown 81.7
1839 Male, age 51, unknown 67.3
2587 Male, age 74, left hemisphere 60.3
1913 Female, age 42, unknown 56.5
1895 Male, age 76, right hemisphere 55.9
1995 Male, age 72, unknown 52.3
Ventral tegmental area
nTPM: 76.6
1915 Female, age 42, unknown 84.3
2410 Female, age 72, unknown 80.6
1942 Male, age 51, unknown 78.3
2218 Male, age 76, both hemispheres 74.9
2021 Male, age 53, unknown 74.6
2223 Female, age 72, unknown 66.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 183

Max nTPM: 132.5
Min nTPM: 7.6
Std nTPM: 20.1
Median nTPM: 32.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 132.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 126.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 96.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 95.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 88.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 77.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 76.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 73.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 72.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 26.0
Min nTPM: 7.7
Sample A Female 24.9
Sample B Female 13.0
Sample C Male 26.0
Sample D Male 7.7
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 19.6
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 12.6
Sample C Male 19.6
Sample D Male 18.1
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 19.9
Min nTPM: 12.7
Sample B Female 12.7
Sample C Male 19.9
Sample D Male 12.8
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 18.8
Min nTPM: 10.5
Sample A Female 18.8
Sample B Female 10.5
Sample C Male 16.4
Sample D Male 13.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.3
Samples: 4

Max nTPM: 39.1
Min nTPM: 36.8
Sample A Male 38.7
Sample B Male 36.8
Sample C Female 38.7
Sample D Female 39.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68546197 Antisense, RP_050120_02_B07, Mouse strain C57BL/6J (56 days, male) 0.7

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