A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.4
nTPM
Monaco:
89.9
nTPM
Schmiedel:
24.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.4
HPA sample
nTPM
NK-cell nTPM: 77.4
Samples: 6
Max nTPM: 98.1
Min nTPM: 46.1
P10809_1013
46.1
P10809_1033
98.1
P10809_1052
80.8
P10809_1071
85.6
P10809_1093
84.5
P10809_1103
69.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.9
Monaco sample
nTPM
NK-cell nTPM: 89.9
Samples: 4
Max nTPM: 102.2
Min nTPM: 59.4
RHH5316_R3683
96.7
RHH5224_R3596
101.4
RHH5253_R3625
59.4
RHH5282_R3654
102.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.8
Schmiedel sample id
TPM
NK-cell TPM: 24.8
Samples: 90
Max TPM: 39.4
Min TPM: 16.4
NK_1
39.4
NK_2
38.6
NK_3
36.2
NK_4
35.3
NK_5
35.1
NK_6
34.3
NK_7
34.0
NK_8
33.6
NK_9
33.2
NK_10
32.1
NK_11
31.0
NK_12
30.9
NK_13
30.9
NK_14
30.0
NK_15
29.9
NK_16
29.8
NK_17
29.8
NK_18
29.4
NK_19
29.1
NK_20
29.0
NK_21
28.9
NK_22
28.7
NK_23
28.3
NK_24
28.3
NK_25
28.2
NK_26
28.0
NK_27
27.5
NK_28
27.4
NK_29
26.9
NK_30
26.7
NK_31
26.6
NK_32
26.2
NK_33
26.1
NK_34
26.1
NK_35
25.8
NK_36
25.8
NK_37
25.7
NK_38
25.5
NK_39
25.4
NK_40
25.2
NK_41
24.9
NK_42
24.8
NK_43
24.8
NK_44
24.3
NK_45
24.2
NK_46
24.1
NK_47
23.9
NK_48
23.5
NK_49
23.4
NK_50
23.3
NK_51
23.2
NK_52
23.0
NK_53
23.0
NK_54
22.8
NK_55
22.6
NK_56
22.6
NK_57
22.6
NK_58
22.5
NK_59
22.3
NK_60
22.1
NK_61
21.5
NK_62
21.5
NK_63
21.3
NK_64
20.7
NK_65
20.6
NK_66
20.4
NK_67
20.3
NK_68
20.2
NK_69
19.9
NK_70
19.9
NK_71
19.8
NK_72
19.8
NK_73
19.7
NK_74
19.5
NK_75
19.5
NK_76
19.5
NK_77
19.4
NK_78
19.0
NK_79
18.9
NK_80
18.7
NK_81
18.2
NK_82
18.2
NK_83
18.1
NK_84
17.7
NK_85
17.3
NK_86
17.3
NK_87
16.8
NK_88
16.7
NK_89
16.6
NK_90
16.4
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