A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.1
nTPM
Monaco:
87.1
nTPM
Schmiedel:
18.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.1
HPA sample
nTPM
Classical monocyte nTPM: 40.3
Samples: 6
Max nTPM: 53.7
Min nTPM: 29.0
P10809_1003
29.0
P10809_1020
53.7
P10809_1039
52.6
P10809_1058
31.2
P10809_1080
39.4
P10809_1107
36.1
Intermediate monocyte nTPM: 51.1
Samples: 6
Max nTPM: 67.1
Min nTPM: 31.9
P10809_1004
31.9
P10809_1023
58.7
P10809_1042
67.1
P10809_1061
61.9
P10809_1081
43.5
P10809_1108
43.6
Non-classical monocyte nTPM: 34.9
Samples: 5
Max nTPM: 46.5
Min nTPM: 20.0
P10809_1005
34.3
P10809_1053
46.5
P10809_1072
20.0
P10809_1082
31.0
P10809_1109
42.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.1
Monaco sample
nTPM
Classical monocyte nTPM: 87.0
Samples: 4
Max nTPM: 96.1
Min nTPM: 72.4
RHH5313_R3680
88.8
RHH5221_R3593
96.1
RHH5250_R3622
90.9
RHH5279_R3651
72.4
Intermediate monocyte nTPM: 83.4
Samples: 4
Max nTPM: 104.9
Min nTPM: 49.2
RHH5314_R3681
99.1
RHH5222_R3594
104.9
RHH5251_R3623
49.2
RHH5280_R3652
80.6
Non-classical monocyte nTPM: 76.5
Samples: 4
Max nTPM: 95.3
Min nTPM: 63.8
RHH5315_R3682
63.8
RHH5223_R3595
95.3
RHH5252_R3624
63.9
RHH5281_R3653
83.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.4
Schmiedel sample id
TPM
Classical monocyte TPM: 12.7
Samples: 91
Max TPM: 19.7
Min TPM: 8.0
MONOCYTES_1
19.7
MONOCYTES_2
19.7
MONOCYTES_3
18.1
MONOCYTES_4
18.1
MONOCYTES_5
17.8
MONOCYTES_6
17.6
MONOCYTES_7
16.8
MONOCYTES_8
16.7
MONOCYTES_9
16.3
MONOCYTES_10
16.0
MONOCYTES_11
16.0
MONOCYTES_12
15.8
MONOCYTES_13
15.7
MONOCYTES_14
15.7
MONOCYTES_15
15.7
MONOCYTES_16
15.6
MONOCYTES_17
15.4
MONOCYTES_18
15.4
MONOCYTES_19
15.3
MONOCYTES_20
15.1
MONOCYTES_21
15.0
MONOCYTES_22
15.0
MONOCYTES_23
15.0
MONOCYTES_24
14.9
MONOCYTES_25
14.8
MONOCYTES_26
14.7
MONOCYTES_27
14.5
MONOCYTES_28
14.4
MONOCYTES_29
14.3
MONOCYTES_30
14.3
MONOCYTES_31
14.2
MONOCYTES_32
13.9
MONOCYTES_33
13.8
MONOCYTES_34
13.6
MONOCYTES_35
13.6
MONOCYTES_36
13.1
MONOCYTES_37
13.0
MONOCYTES_38
13.0
MONOCYTES_39
12.9
MONOCYTES_40
12.9
MONOCYTES_41
12.8
MONOCYTES_42
12.8
MONOCYTES_43
12.7
MONOCYTES_44
12.7
MONOCYTES_45
12.6
MONOCYTES_46
12.6
MONOCYTES_47
12.6
MONOCYTES_48
12.5
MONOCYTES_49
12.5
MONOCYTES_50
12.3
MONOCYTES_51
12.2
MONOCYTES_52
12.1
MONOCYTES_53
12.1
MONOCYTES_54
11.9
MONOCYTES_55
11.7
MONOCYTES_56
11.4
MONOCYTES_57
11.4
MONOCYTES_58
11.4
MONOCYTES_59
11.3
MONOCYTES_60
11.3
MONOCYTES_61
11.3
MONOCYTES_62
11.2
MONOCYTES_63
11.1
MONOCYTES_64
11.0
MONOCYTES_65
10.9
MONOCYTES_66
10.7
MONOCYTES_67
10.7
MONOCYTES_68
10.6
MONOCYTES_69
10.6
MONOCYTES_70
10.5
MONOCYTES_71
10.5
MONOCYTES_72
10.4
MONOCYTES_73
10.4
MONOCYTES_74
10.4
MONOCYTES_75
10.3
MONOCYTES_76
10.0
MONOCYTES_77
9.9
MONOCYTES_78
9.6
MONOCYTES_79
9.6
MONOCYTES_80
9.2
MONOCYTES_81
9.1
MONOCYTES_82
9.0
MONOCYTES_83
8.9
MONOCYTES_84
8.8
MONOCYTES_85
8.7
MONOCYTES_86
8.6
MONOCYTES_87
8.3
MONOCYTES_88
8.3
MONOCYTES_89
8.2
MONOCYTES_90
8.1
MONOCYTES_91
8.0
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Non-classical monocyte TPM: 18.4
Samples: 90
Max TPM: 28.7
Min TPM: 11.4
M2_1
28.7
M2_2
27.7
M2_3
25.2
M2_4
25.1
M2_5
24.9
M2_6
24.8
M2_7
24.7
M2_8
24.2
M2_9
23.8
M2_10
23.2
M2_11
22.8
M2_12
22.6
M2_13
21.8
M2_14
21.4
M2_15
21.3
M2_16
21.0
M2_17
20.9
M2_18
20.8
M2_19
20.8
M2_20
20.8
M2_21
20.7
M2_22
20.7
M2_23
20.2
M2_24
20.1
M2_25
20.0
M2_26
20.0
M2_27
19.9
M2_28
19.9
M2_29
19.8
M2_30
19.8
M2_31
19.7
M2_32
19.7
M2_33
19.7
M2_34
19.5
M2_35
19.4
M2_36
19.4
M2_37
19.3
M2_38
19.2
M2_39
19.2
M2_40
19.0
M2_41
19.0
M2_42
18.9
M2_43
18.9
M2_44
18.8
M2_45
18.6
M2_46
18.6
M2_47
18.6
M2_48
18.4
M2_49
18.1
M2_50
18.1
M2_51
18.1
M2_52
18.0
M2_53
17.9
M2_54
17.7
M2_55
17.2
M2_56
17.2
M2_57
17.1
M2_58
17.0
M2_59
16.8
M2_60
16.8
M2_61
16.3
M2_62
16.1
M2_63
15.9
M2_64
15.7
M2_65
15.5
M2_66
15.4
M2_67
15.4
M2_68
15.4
M2_69
15.3
M2_70
15.1
M2_71
15.0
M2_72
14.8
M2_73
14.7
M2_74
14.7
M2_75
14.6
M2_76
14.4
M2_77
14.4
M2_78
14.4
M2_79
14.2
M2_80
13.9
M2_81
13.8
M2_82
13.8
M2_83
13.8
M2_84
13.7
M2_85
13.2
M2_86
13.1
M2_87
13.0
M2_88
12.3
M2_89
11.8
M2_90
11.4
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