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  • RPS26
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:546.2 nTPM
HPA Brain:69.0 nTPM
GTEx:546.2 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:2135.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 62.4
2565 Male, age 75, midline 86.8
2048 Male, age 55, midline 65.8
1981 Female, age 72, midline 59.7
2816 Male, age 47, midline 51.9
2194 Female, age 79, both hemispheres 48.0
Cervical spinal cord, dorsal horn
nTPM: 57.6
2173 Female, age 72, unknown 65.1
2721 Male, age 90, both hemispheres 65.0
2069 Male, age 47, both hemispheres 62.0
1877 Male, age 55, unknown 54.0
2296 Male, age 66, both hemispheres 52.7
2297 Male, age 75, both hemispheres 46.9
Cervical spinal cord, ventral horn
nTPM: 69.0
2480 Male, age 75, both hemispheres 119.4
2809 Male, age 90, both hemispheres 73.2
2068 Male, age 55, unknown 58.2
2098 Female, age 72, unknown 57.1
2295 Male, age 66, both hemispheres 56.9
2820 Female, age 79, both hemispheres 49.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

546.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 546.2
Samples: 204

Max nTPM: 1658.7
Min nTPM: 156.9
Std nTPM: 303.0
Median nTPM: 510.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1658.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1473.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1386.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1375.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1359.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1236.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1235.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1212.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1177.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1164.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1154.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1113.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1038.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1009.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1003.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1003.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 988.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 984.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 964.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 938.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 935.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 929.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 918.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 917.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 915.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 915.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 907.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 903.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 898.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 888.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 880.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 864.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 854.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 853.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 842.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 836.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 803.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 796.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 796.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 790.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 790.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 785.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 779.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 769.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 759.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 759.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 756.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 749.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 747.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 742.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 732.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 724.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 724.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 721.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 718.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 710.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 707.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 704.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 699.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 691.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 683.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 679.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 675.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 674.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 673.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 666.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 633.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 628.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 625.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 623.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 619.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 618.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 617.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 617.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 605.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 604.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 596.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 594.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 589.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 583.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 583.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 582.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 580.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 579.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 575.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 572.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 566.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 560.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 559.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 548.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 548.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 547.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 546.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 544.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 533.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 532.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 532.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 532.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 519.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 518.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 515.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 511.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 508.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 501.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 498.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 497.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 489.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 486.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 483.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 482.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 481.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 474.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 473.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 471.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 465.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 461.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 456.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 443.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 439.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 437.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 428.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 422.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 405.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 403.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 392.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 387.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 387.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 383.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 376.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 365.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 359.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 355.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 352.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 346.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 339.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 335.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 334.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 333.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 331.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 326.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 325.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 322.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 321.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 304.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 301.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 298.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 297.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 293.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 292.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 289.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 281.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 279.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 279.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 277.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 272.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 263.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 260.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 258.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 257.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 256.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 256.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 255.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 255.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 250.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 248.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 247.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 244.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 244.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 243.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 243.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 239.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 232.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 228.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 228.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 224.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 221.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 219.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 219.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 216.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 216.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 214.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 213.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 213.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 213.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 211.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 208.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 208.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 205.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 205.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 201.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 201.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 196.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 192.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 190.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 187.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 186.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 185.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 184.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 177.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 176.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 172.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 167.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 166.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 156.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 13.2
FF:10159-103A6 76 years, female 14.8
FF:10181-103D1 60 years, female 11.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2135.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2135.5
Samples: 4

Max nTPM: 3250.4
Min nTPM: 1458.4
Sample A Female 1569.7
Sample B Female 2263.5
Sample C Male 3250.4
Sample D Male 1458.4
Ventral spinal cord
nTPM: 1978.3
Samples: 4

Max nTPM: 2411.2
Min nTPM: 1636.6
Sample A Female 1636.6
Sample B Female 2060.6
Sample C Male 2411.2
Sample D Male 1804.7

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