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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:557.8 nTPM
HPA Brain:1281.9 nTPM
GTEx:557.8 nTPM
FANTOM5:1067.6 Scaled Tags Per Million
Pig:510.9 nTPM
Mouse:1227.6 nTPM
Allen mouse:27.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1281.9
Sample id Sample description nTPM
Amygdala
nTPM: 1281.9
1987 Female, age 91, left hemisphere 1469.9
2814 Male, age 76, right hemisphere 1300.2
2517 Female, age 94, left hemisphere 1233.8
2514 Male, age 75, right hemisphere 1212.3
2695 Female, age 67, right hemisphere 1193.0
Basal amygdala
nTPM: 992.4
2110 Male, age 80, left hemisphere 1202.7
1955 Male, age 76, both hemispheres 1119.5
2243 Female, age 91, right hemisphere 1063.6
2609 Male, age 75, right hemisphere 1060.6
2685 Female, age 94, left hemisphere 1041.4
2827 Female, age 67, right hemisphere 466.3
Central amygdala
nTPM: 1160.0
2826 Female, age 94, left hemisphere 1258.2
2515 Male, age 75, right hemisphere 1251.9
1905 Male, age 76, both hemispheres 1247.9
2701 Female, age 91, right hemisphere 1027.1
2239 Male, age 80, left hemisphere 1015.0
Corticomedial amygdala
nTPM: 972.6
2829 Male, age 80, left hemisphere 1153.9
2428 Male, age 75, right hemisphere 1106.9
2242 Female, age 91, right hemisphere 1078.5
2429 Female, age 94, left hemisphere 1027.1
2240 Male, age 76, both hemispheres 985.1
2535 Female, age 67, right hemisphere 484.3
Lateral amygdala
nTPM: 977.8
1883 Male, age 76, both hemispheres 1201.9
2534 Female, age 94, left hemisphere 1165.3
2516 Male, age 75, right hemisphere 1024.6
2255 Female, age 91, right hemisphere 993.8
2256 Male, age 80, left hemisphere 961.0
2830 Female, age 67, right hemisphere 520.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

557.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 557.8
Samples: 181

Max nTPM: 1046.4
Min nTPM: 245.4
Std nTPM: 145.7
Median nTPM: 545.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1046.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 930.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 901.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 899.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 874.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 863.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 862.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 860.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 855.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 805.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 796.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 778.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 777.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 774.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 769.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 766.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 763.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 757.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 743.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 741.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 735.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 734.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 722.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 718.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 716.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 713.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 713.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 708.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 707.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 698.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 697.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 694.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 693.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 693.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 684.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 673.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 662.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 660.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 658.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 653.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 652.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 650.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 646.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 643.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 640.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 638.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 638.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 637.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 629.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 627.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 627.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 625.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 624.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 623.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 619.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 618.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 613.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 611.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 610.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 609.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 608.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 608.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 605.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 599.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 598.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 595.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 595.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 592.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 591.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 591.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 590.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 588.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 587.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 585.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 580.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 578.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 577.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 576.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 573.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 571.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 570.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 568.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 568.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 566.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 560.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 560.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 553.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 553.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 551.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 551.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 545.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 543.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 543.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 541.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 538.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 537.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 537.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 536.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 536.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 536.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 536.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 533.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 532.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 523.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 522.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 521.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 518.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 517.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 515.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 514.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 512.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 505.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 504.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 504.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 503.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 502.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 501.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 500.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 500.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 500.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 498.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 496.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 496.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 492.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 489.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 488.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 487.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 485.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 484.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 484.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 480.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 480.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 479.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 478.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 468.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 467.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 467.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 464.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 463.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 451.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 448.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 444.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 443.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 440.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 437.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 434.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 432.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 431.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 429.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 428.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 424.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 422.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 415.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 415.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 415.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 397.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 391.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 387.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 385.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 383.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 378.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 377.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 368.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 359.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 351.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 350.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 348.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 346.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 339.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 329.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 318.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 314.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 313.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 310.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 307.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 296.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 288.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 287.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 278.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 276.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 245.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1067.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1067.6
FF:10151-102I7 76 years, female 1067.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

510.9
Pig sample Sample description nTPM
Amygdala
nTPM: 510.9
Samples: 4

Max nTPM: 652.8
Min nTPM: 412.7
Sample A Female 652.8
Sample B Female 412.7
Sample C Male 517.0
Sample D Male 461.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1227.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1227.6
Samples: 4

Max nTPM: 1302.2
Min nTPM: 1158.5
Sample A Male 1302.2
Sample B Male 1158.5
Sample C Female 1252.4
Sample D Female 1197.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.6
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 35.0
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 20.2
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 18.3

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