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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:597.5 nTPM
HPA Brain:1733.5 nTPM
GTEx:597.5 nTPM
FANTOM5:1247.4 Scaled Tags Per Million
Pig:1002.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1733.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1733.5
1981 Female, age 72, midline 2161.0
2565 Male, age 75, midline 2069.1
2048 Male, age 55, midline 1554.0
2816 Male, age 47, midline 1468.2
2194 Female, age 79, both hemispheres 1415.1
Cervical spinal cord, dorsal horn
nTPM: 1700.9
2069 Male, age 47, both hemispheres 2042.1
2173 Female, age 72, unknown 2040.4
2296 Male, age 66, both hemispheres 1836.7
1877 Male, age 55, unknown 1533.5
2721 Male, age 90, both hemispheres 1478.8
2297 Male, age 75, both hemispheres 1274.0
Cervical spinal cord, ventral horn
nTPM: 1575.7
2098 Female, age 72, unknown 2573.5
2809 Male, age 90, both hemispheres 1793.5
2295 Male, age 66, both hemispheres 1474.6
2068 Male, age 55, unknown 1297.9
2480 Male, age 75, both hemispheres 1262.9
2820 Female, age 79, both hemispheres 1052.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

597.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 597.5
Samples: 204

Max nTPM: 2246.7
Min nTPM: 269.8
Std nTPM: 197.8
Median nTPM: 578.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2246.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1038.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 983.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 964.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 955.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 945.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 929.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 919.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 909.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 900.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 891.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 882.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 879.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 876.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 871.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 870.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 852.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 847.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 839.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 828.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 826.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 806.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 804.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 803.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 799.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 797.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 797.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 784.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 778.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 768.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 766.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 765.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 762.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 749.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 747.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 746.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 744.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 742.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 740.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 737.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 730.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 724.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 719.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 718.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 715.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 708.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 707.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 701.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 697.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 695.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 687.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 679.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 678.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 677.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 675.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 675.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 666.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 666.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 664.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 662.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 662.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 659.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 658.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 657.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 657.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 655.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 654.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 651.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 651.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 648.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 648.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 644.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 639.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 638.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 636.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 635.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 635.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 625.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 624.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 623.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 621.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 617.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 613.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 609.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 609.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 608.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 607.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 602.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 602.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 597.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 595.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 595.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 594.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 589.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 587.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 587.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 584.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 584.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 583.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 581.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 579.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 579.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 578.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 576.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 576.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 574.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 572.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 571.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 570.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 569.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 567.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 565.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 564.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 563.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 561.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 556.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 556.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 556.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 550.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 550.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 549.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 548.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 545.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 538.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 537.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 537.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 536.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 534.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 533.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 533.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 528.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 526.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 519.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 517.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 516.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 515.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 508.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 508.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 505.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 498.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 497.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 497.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 496.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 494.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 492.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 491.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 489.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 484.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 483.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 481.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 480.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 479.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 476.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 468.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 464.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 463.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 458.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 455.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 455.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 455.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 446.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 444.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 441.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 436.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 435.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 432.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 431.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 429.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 427.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 423.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 421.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 420.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 416.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 413.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 410.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 410.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 407.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 403.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 400.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 399.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 390.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 385.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 381.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 379.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 378.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 376.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 375.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 373.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 366.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 358.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 357.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 355.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 353.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 348.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 347.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 346.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 343.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 343.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 335.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 316.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 296.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 290.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 283.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 269.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1247.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1247.4
FF:10181-103D1 60 years, female 1296.7
FF:10159-103A6 76 years, female 1198.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1002.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 870.6
Samples: 4

Max nTPM: 1026.6
Min nTPM: 787.9
Sample A Female 868.0
Sample B Female 800.0
Sample C Male 1026.6
Sample D Male 787.9
Ventral spinal cord
nTPM: 1002.0
Samples: 4

Max nTPM: 1052.9
Min nTPM: 927.9
Sample A Female 1052.9
Sample B Female 984.5
Sample C Male 1042.8
Sample D Male 927.9

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