MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2881.0 nTPM
HPA Brain:796.5 nTPM
GTEx:2881.0 nTPM
FANTOM5:525.5 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:530.5 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 796.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 709.1
2666 Male, age 74, left hemisphere 878.3
1870 Female, age 42, unknown 822.7
2586 Male, age 75, left hemisphere 790.7
2411 Female, age 72, unknown 706.7
2828 Female, age 72, unknown 680.4
1833 Male, age 53, unknown 665.7
1827 Male, age 72, unknown 660.4
1830 Male, age 51, unknown 645.4
2219 Male, age 76, both hemispheres 628.7
2019 Male, age 18, unknown 612.4
Dorsal raphe nucleus
nTPM: 652.6
2750 Male, age 76, both hemispheres 711.1
2298 Female, age 72, unknown 682.8
2016 Female, age 72, unknown 645.9
1828 Male, age 53, unknown 628.5
2047 Male, age 72, unknown 594.5
Inferior colliculus
nTPM: 647.5
1890 Male, age 53, unknown 709.4
2849 Male, age 72, unknown 683.9
1848 Female, age 42, unknown 615.8
2097 Female, age 72, unknown 581.0
Median raphe nucleus
nTPM: 693.6
2220 Male, age 76, midline 693.6
Periaquaductal grey, anterior
nTPM: 649.1
2502 Female, age 75, unknown 734.6
1795 Male, age 51, unknown 609.7
1947 Male, age 18, unknown 603.0
Periaquaductal grey, dorsal
nTPM: 630.9
1840 Male, age 53, unknown 738.7
2850 Male, age 76, both hemispheres 633.9
1831 Male, age 72, unknown 625.0
2464 Female, age 72, unknown 526.0
Periaquaductal grey, lateral
nTPM: 559.9
2140 Male, age 76, both hemispheres 625.0
2053 Male, age 18, unknown 624.7
2272 Male, age 74, both hemispheres 430.0
Pretectal area
nTPM: 625.7
1817 Female, age 42, unknown 672.4
2825 Male, age 18, unknown 670.3
2007 Male, age 72, unknown 669.5
1815 Male, age 53, unknown 655.9
1816 Male, age 51, unknown 655.1
2224 Female, age 72, unknown 647.0
2316 Male, age 76, right hemisphere 645.4
1944 Female, age 72, unknown 619.0
2667 Female, age 75, unknown 618.7
2407 Male, age 75, both hemispheres 583.7
2273 Male, age 74, both hemispheres 446.2
Red nucleus
nTPM: 774.1
2503 Female, age 72, unknown 1016.9
1904 Male, age 53, unknown 831.4
1821 Female, age 72, unknown 829.4
1865 Male, age 51, unknown 807.1
2769 Male, age 72, unknown 788.8
2584 Male, age 75, left hemisphere 776.9
2227 Male, age 72, unknown 758.9
2725 Female, age 75, unknown 754.5
2588 Male, age 74, left hemisphere 750.2
2785 Male, age 18, unknown 706.1
1954 Female, age 42, unknown 672.5
2823 Male, age 76, right hemisphere 596.5
Substantia nigra
nTPM: 796.5
2699 Male, age 18, unknown 1024.7
1851 Male, age 51, unknown 972.7
2665 Male, age 74, both hemispheres 925.1
2409 Female, age 72, unknown 894.7
1916 Female, age 42, unknown 858.1
1889 Female, age 72, unknown 737.7
2241 Male, age 72, unknown 727.0
2590 Female, age 75, unknown 634.3
1941 Male, age 53, unknown 599.2
2583 Male, age 75, right hemisphere 591.4
Superior colliculus
nTPM: 708.2
1913 Female, age 42, unknown 852.9
2587 Male, age 74, left hemisphere 843.5
2668 Female, age 75, unknown 779.2
1995 Male, age 72, unknown 763.9
1796 Male, age 53, unknown 738.8
1895 Male, age 76, right hemisphere 659.2
2664 Male, age 75, both hemispheres 658.2
1839 Male, age 51, unknown 621.0
2261 Male, age 18, unknown 588.5
2087 Female, age 72, unknown 577.1
Ventral tegmental area
nTPM: 767.5
1915 Female, age 42, unknown 927.9
2223 Female, age 72, unknown 908.0
1942 Male, age 51, unknown 721.9
2410 Female, age 72, unknown 705.8
2021 Male, age 53, unknown 698.2
2218 Male, age 76, both hemispheres 643.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2881.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2881.0
Samples: 183

Max nTPM: 8601.3
Min nTPM: 823.6
Std nTPM: 1172.8
Median nTPM: 2659.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 8601.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 8133.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6143.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5595.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 5530.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5366.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 5328.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 5324.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4931.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4796.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 4752.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 525.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 525.5
FF:10158-103A5 76 years, female 525.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 530.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 530.5
Samples: 4

Max nTPM: 587.5
Min nTPM: 477.4
Sample A Male 587.5
Sample B Male 520.5
Sample C Female 477.4
Sample D Female 536.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
69818311 Antisense, RP_050510_04_H03, Mouse strain C57BL/6J (56 days, male) 2.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo