BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:859.3 nTPM
HPA Brain:277.4 nTPM
GTEx:859.3 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Macaque:210.9 nTPM
Mouse:4.4 nTPM
Rat:44.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 277.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 224.2
1870 Female, age 42, unknown 270.4
2666 Male, age 74, left hemisphere 249.8
2828 Female, age 72, unknown 243.1
1833 Male, age 53, unknown 232.6
1830 Male, age 51, unknown 231.9
2411 Female, age 72, unknown 222.2
2219 Male, age 76, both hemispheres 210.9
1827 Male, age 72, unknown 208.1
2019 Male, age 18, unknown 191.4
2586 Male, age 75, left hemisphere 181.5
Dorsal raphe nucleus
nTPM: 227.9
2016 Female, age 72, unknown 246.5
2298 Female, age 72, unknown 238.7
2750 Male, age 76, both hemispheres 231.7
1828 Male, age 53, unknown 214.1
2047 Male, age 72, unknown 208.7
Inferior colliculus
nTPM: 211.8
1890 Male, age 53, unknown 229.0
2849 Male, age 72, unknown 218.4
1848 Female, age 42, unknown 210.3
2097 Female, age 72, unknown 189.7
Median raphe nucleus
nTPM: 277.4
2220 Male, age 76, midline 277.4
Periaquaductal grey, anterior
nTPM: 217.9
2502 Female, age 75, unknown 228.3
1795 Male, age 51, unknown 217.0
1947 Male, age 18, unknown 208.3
Periaquaductal grey, dorsal
nTPM: 238.1
2850 Male, age 76, both hemispheres 276.7
1831 Male, age 72, unknown 245.8
1840 Male, age 53, unknown 225.9
2464 Female, age 72, unknown 204.0
Periaquaductal grey, lateral
nTPM: 242.1
2053 Male, age 18, unknown 251.3
2140 Male, age 76, both hemispheres 240.2
2272 Male, age 74, both hemispheres 234.8
Pretectal area
nTPM: 216.4
2224 Female, age 72, unknown 237.2
2316 Male, age 76, right hemisphere 232.1
1815 Male, age 53, unknown 230.4
1817 Female, age 42, unknown 230.4
2273 Male, age 74, both hemispheres 220.7
2825 Male, age 18, unknown 218.5
1944 Female, age 72, unknown 216.0
1816 Male, age 51, unknown 204.2
2007 Male, age 72, unknown 201.0
2407 Male, age 75, both hemispheres 199.0
2667 Female, age 75, unknown 191.0
Red nucleus
nTPM: 248.5
2503 Female, age 72, unknown 306.2
1865 Male, age 51, unknown 282.4
1904 Male, age 53, unknown 262.3
1821 Female, age 72, unknown 258.4
2725 Female, age 75, unknown 253.0
2769 Male, age 72, unknown 244.3
2785 Male, age 18, unknown 234.2
1954 Female, age 42, unknown 233.9
2584 Male, age 75, left hemisphere 231.9
2823 Male, age 76, right hemisphere 231.7
2227 Male, age 72, unknown 225.6
2588 Male, age 74, left hemisphere 218.4
Substantia nigra
nTPM: 264.9
2699 Male, age 18, unknown 347.7
1851 Male, age 51, unknown 300.2
2241 Male, age 72, unknown 279.7
2665 Male, age 74, both hemispheres 275.5
2409 Female, age 72, unknown 270.6
1916 Female, age 42, unknown 262.2
2590 Female, age 75, unknown 252.2
1889 Female, age 72, unknown 239.3
1941 Male, age 53, unknown 224.6
2583 Male, age 75, right hemisphere 197.3
Superior colliculus
nTPM: 234.5
2587 Male, age 74, left hemisphere 290.8
1913 Female, age 42, unknown 282.3
1995 Male, age 72, unknown 280.9
2668 Female, age 75, unknown 253.3
1796 Male, age 53, unknown 237.5
2261 Male, age 18, unknown 213.2
1839 Male, age 51, unknown 208.5
1895 Male, age 76, right hemisphere 205.5
2087 Female, age 72, unknown 200.8
2664 Male, age 75, both hemispheres 172.4
Ventral tegmental area
nTPM: 274.4
2223 Female, age 72, unknown 311.6
1915 Female, age 42, unknown 286.7
2218 Male, age 76, both hemispheres 273.1
2021 Male, age 53, unknown 269.9
2410 Female, age 72, unknown 268.9
1942 Male, age 51, unknown 236.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 859.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 859.3
Samples: 183

Max nTPM: 2153.7
Min nTPM: 253.8
Std nTPM: 326.3
Median nTPM: 799.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2153.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1993.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1829.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1585.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1548.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1540.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1515.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1498.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1470.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1428.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1413.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.7
FF:10158-103A5 76 years, female 8.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 210.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 127.9
Samples: 1

Max nTPM: 127.9
Min nTPM: 127.9
Sample A 127.9
Midbrain
nTPM: 210.9
Samples: 1

Max nTPM: 210.9
Min nTPM: 210.9
Sample A 210.9
Superior colliculi
nTPM: 179.0
Samples: 1

Max nTPM: 179.0
Min nTPM: 179.0
Sample A 179.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.8
Sample A 4.5
Sample B 4.8
Sample C 3.8
Sample D 4.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 44.9
Rat sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 48.5
Min nTPM: 39.0
Sample A 44.2
Sample A 48.1
Sample A 39.0
Sample A 48.5

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