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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:619.5 nTPM
HPA Brain:188.7 nTPM
GTEx:619.5 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:506.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 135.5
1981 Female, age 72, midline 184.1
2565 Male, age 75, midline 144.7
2048 Male, age 55, midline 125.1
2194 Female, age 79, both hemispheres 119.6
2816 Male, age 47, midline 104.2
Cervical spinal cord, dorsal horn
nTPM: 148.1
2173 Female, age 72, unknown 200.8
2069 Male, age 47, both hemispheres 189.6
2296 Male, age 66, both hemispheres 167.4
1877 Male, age 55, unknown 129.8
2721 Male, age 90, both hemispheres 106.7
2297 Male, age 75, both hemispheres 94.5
Cervical spinal cord, ventral horn
nTPM: 188.7
2480 Male, age 75, both hemispheres 258.1
2098 Female, age 72, unknown 235.0
2809 Male, age 90, both hemispheres 217.4
2295 Male, age 66, both hemispheres 194.8
2068 Male, age 55, unknown 134.5
2820 Female, age 79, both hemispheres 92.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

619.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 619.5
Samples: 204

Max nTPM: 1300.4
Min nTPM: 244.8
Std nTPM: 227.6
Median nTPM: 568.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1300.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1292.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1290.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1277.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1268.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1203.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1184.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1157.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1135.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1092.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1090.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1068.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1022.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1016.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1013.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1000.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 979.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 968.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 966.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 951.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 949.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 908.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 889.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 887.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 878.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 876.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 875.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 867.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 858.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 846.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 841.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 838.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 836.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 830.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 824.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 820.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 808.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 796.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 794.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 794.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 790.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 790.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 787.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 781.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 777.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 771.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 770.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 767.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 765.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 759.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 759.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 757.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 755.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 744.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 732.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 731.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 721.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 718.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 714.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 713.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 709.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 701.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 700.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 699.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 692.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 687.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 686.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 683.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 675.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 673.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 671.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 670.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 668.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 665.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 660.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 653.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 647.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 644.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 641.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 632.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 631.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 625.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 621.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 619.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 618.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 614.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 612.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 608.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 608.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 600.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 600.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 599.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 597.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 588.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 586.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 585.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 585.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 584.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 582.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 577.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 577.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 568.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 568.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 565.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 565.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 564.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 563.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 561.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 556.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 554.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 552.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 544.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 544.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 541.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 537.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 537.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 536.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 533.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 531.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 530.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 529.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 529.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 526.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 526.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 523.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 519.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 512.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 511.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 511.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 510.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 506.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 500.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 497.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 497.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 496.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 494.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 488.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 486.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 485.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 481.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 479.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 478.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 477.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 474.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 471.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 470.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 464.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 462.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 459.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 459.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 458.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 457.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 455.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 451.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 451.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 449.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 448.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 444.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 444.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 443.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 441.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 437.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 435.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 428.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 427.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 423.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 419.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 418.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 415.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 409.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 407.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 406.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 404.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 398.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 393.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 393.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 390.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 386.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 386.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 377.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 376.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 366.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 365.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 365.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 360.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 360.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 359.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 356.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 352.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 351.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 344.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 343.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 337.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 332.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 330.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 324.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 305.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 299.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 298.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 290.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 282.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 280.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 248.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 244.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 39.4
FF:10181-103D1 60 years, female 41.1
FF:10159-103A6 76 years, female 37.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

506.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 506.2
Samples: 4

Max nTPM: 700.8
Min nTPM: 345.6
Sample A Female 345.6
Sample B Female 575.4
Sample C Male 700.8
Sample D Male 402.9
Ventral spinal cord
nTPM: 467.6
Samples: 4

Max nTPM: 522.4
Min nTPM: 376.9
Sample A Female 376.9
Sample B Female 522.4
Sample C Male 517.0
Sample D Male 453.9

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