BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:528.0 nTPM
HPA Brain:137.3 nTPM
GTEx:528.0 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Macaque:208.7 nTPM
Mouse:306.9 nTPM
Rat:10.0 nTPM
Pig:397.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 137.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.1
1870 Female, age 42, unknown 149.1
2666 Male, age 74, left hemisphere 146.3
2411 Female, age 72, unknown 133.7
1833 Male, age 53, unknown 120.1
2219 Male, age 76, both hemispheres 118.3
1827 Male, age 72, unknown 115.4
1830 Male, age 51, unknown 112.6
2828 Female, age 72, unknown 108.7
2019 Male, age 18, unknown 101.1
2586 Male, age 75, left hemisphere 95.5
Dorsal raphe nucleus
nTPM: 122.0
2298 Female, age 72, unknown 135.2
2016 Female, age 72, unknown 132.5
2750 Male, age 76, both hemispheres 129.9
1828 Male, age 53, unknown 107.9
2047 Male, age 72, unknown 104.7
Inferior colliculus
nTPM: 127.9
2849 Male, age 72, unknown 134.8
1848 Female, age 42, unknown 129.8
1890 Male, age 53, unknown 127.2
2097 Female, age 72, unknown 119.8
Median raphe nucleus
nTPM: 130.5
2220 Male, age 76, midline 130.5
Periaquaductal grey, anterior
nTPM: 121.6
2502 Female, age 75, unknown 140.5
1947 Male, age 18, unknown 114.2
1795 Male, age 51, unknown 110.1
Periaquaductal grey, dorsal
nTPM: 126.9
1840 Male, age 53, unknown 151.6
2850 Male, age 76, both hemispheres 127.8
2464 Female, age 72, unknown 115.6
1831 Male, age 72, unknown 112.8
Periaquaductal grey, lateral
nTPM: 121.1
2140 Male, age 76, both hemispheres 130.0
2053 Male, age 18, unknown 125.1
2272 Male, age 74, both hemispheres 108.3
Pretectal area
nTPM: 110.8
2224 Female, age 72, unknown 134.2
2316 Male, age 76, right hemisphere 134.1
2825 Male, age 18, unknown 128.3
1817 Female, age 42, unknown 114.2
1815 Male, age 53, unknown 113.9
2007 Male, age 72, unknown 104.9
2667 Female, age 75, unknown 101.9
1816 Male, age 51, unknown 101.7
1944 Female, age 72, unknown 96.6
2273 Male, age 74, both hemispheres 95.8
2407 Male, age 75, both hemispheres 93.1
Red nucleus
nTPM: 127.3
2503 Female, age 72, unknown 171.2
1821 Female, age 72, unknown 141.0
1865 Male, age 51, unknown 137.5
2227 Male, age 72, unknown 129.9
2725 Female, age 75, unknown 128.1
2769 Male, age 72, unknown 124.4
1904 Male, age 53, unknown 123.6
2588 Male, age 74, left hemisphere 120.3
1954 Female, age 42, unknown 119.8
2823 Male, age 76, right hemisphere 111.8
2584 Male, age 75, left hemisphere 110.2
2785 Male, age 18, unknown 109.9
Substantia nigra
nTPM: 127.1
2241 Male, age 72, unknown 155.6
2699 Male, age 18, unknown 154.6
1851 Male, age 51, unknown 149.8
2665 Male, age 74, both hemispheres 144.9
2409 Female, age 72, unknown 134.9
2590 Female, age 75, unknown 121.5
1916 Female, age 42, unknown 116.0
1941 Male, age 53, unknown 106.8
1889 Female, age 72, unknown 105.7
2583 Male, age 75, right hemisphere 81.6
Superior colliculus
nTPM: 121.0
2587 Male, age 74, left hemisphere 150.3
1913 Female, age 42, unknown 141.2
1839 Male, age 51, unknown 127.9
1995 Male, age 72, unknown 126.1
1796 Male, age 53, unknown 118.8
2261 Male, age 18, unknown 114.7
2668 Female, age 75, unknown 112.8
1895 Male, age 76, right hemisphere 110.7
2664 Male, age 75, both hemispheres 107.8
2087 Female, age 72, unknown 99.4
Ventral tegmental area
nTPM: 137.3
2223 Female, age 72, unknown 154.5
2021 Male, age 53, unknown 148.2
1915 Female, age 42, unknown 137.8
2410 Female, age 72, unknown 135.1
2218 Male, age 76, both hemispheres 124.9
1942 Male, age 51, unknown 123.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 528.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 528.0
Samples: 183

Max nTPM: 1139.6
Min nTPM: 219.9
Std nTPM: 180.0
Median nTPM: 503.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1139.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1045.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1026.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 982.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 977.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 951.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 946.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 929.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 855.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 850.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 840.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 208.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 163.1
Samples: 1

Max nTPM: 163.1
Min nTPM: 163.1
Sample A 163.1
Midbrain
nTPM: 208.7
Samples: 1

Max nTPM: 208.7
Min nTPM: 208.7
Sample A 208.7
Superior colliculi
nTPM: 157.5
Samples: 1

Max nTPM: 157.5
Min nTPM: 157.5
Sample A 157.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 397.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 397.3
Samples: 3

Max nTPM: 447.1
Min nTPM: 364.8
Sample A Female 447.1
Sample B Female 379.9
Sample C Male 364.8
Midbrain
nTPM: 329.8
Samples: 3

Max nTPM: 412.3
Min nTPM: 287.1
Sample B Female 412.3
Sample C Male 289.9
Sample D Male 287.1
Periaqueductal gray
nTPM: 324.0
Samples: 3

Max nTPM: 339.3
Min nTPM: 296.1
Sample B Female 336.5
Sample C Male 339.3
Sample D Male 296.1
Superior colliculi
nTPM: 381.2
Samples: 4

Max nTPM: 426.2
Min nTPM: 342.5
Sample A Female 426.2
Sample B Female 408.2
Sample C Male 342.5
Sample D Male 348.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 306.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 306.9
Samples: 4

Max nTPM: 329.6
Min nTPM: 288.7
Sample A 329.6
Sample B 296.7
Sample C 288.7
Sample D 312.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 10.0
Rat sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 12.2
Min nTPM: 8.2
Sample A 10.0
Sample A 8.2
Sample A 9.6
Sample A 12.2

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