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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:101.8 nTPM
HPA Brain:227.3 nTPM
GTEx:101.8 nTPM
FANTOM5:255.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.3
Sample id Sample description nTPM
Amygdala
nTPM: 193.5
2517 Female, age 94, left hemisphere 212.9
2695 Female, age 67, right hemisphere 210.9
2514 Male, age 75, right hemisphere 194.9
2814 Male, age 76, right hemisphere 190.5
1987 Female, age 91, left hemisphere 158.4
Basal amygdala
nTPM: 227.3
2609 Male, age 75, right hemisphere 257.7
2243 Female, age 91, right hemisphere 245.9
2685 Female, age 94, left hemisphere 242.3
2110 Male, age 80, left hemisphere 224.5
1955 Male, age 76, both hemispheres 215.1
2827 Female, age 67, right hemisphere 178.5
Central amygdala
nTPM: 190.3
2826 Female, age 94, left hemisphere 216.2
2239 Male, age 80, left hemisphere 213.3
2515 Male, age 75, right hemisphere 192.1
1905 Male, age 76, both hemispheres 189.0
2701 Female, age 91, right hemisphere 140.7
Corticomedial amygdala
nTPM: 208.8
2829 Male, age 80, left hemisphere 254.3
2428 Male, age 75, right hemisphere 218.9
2240 Male, age 76, both hemispheres 205.6
2242 Female, age 91, right hemisphere 195.3
2429 Female, age 94, left hemisphere 194.7
2535 Female, age 67, right hemisphere 184.1
Lateral amygdala
nTPM: 197.0
2534 Female, age 94, left hemisphere 224.8
2256 Male, age 80, left hemisphere 223.5
1883 Male, age 76, both hemispheres 207.7
2516 Male, age 75, right hemisphere 207.1
2255 Female, age 91, right hemisphere 169.7
2830 Female, age 67, right hemisphere 149.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 101.8
Samples: 181

Max nTPM: 227.0
Min nTPM: 45.3
Std nTPM: 26.2
Median nTPM: 100.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 227.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 175.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 171.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 157.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 147.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 147.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 142.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 141.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 138.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 138.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 137.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 135.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 135.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 134.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 132.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 131.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 130.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 129.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 129.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 129.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 129.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 128.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 128.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 128.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 127.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 126.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 126.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 125.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 125.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 124.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 124.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 124.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 123.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 123.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 122.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 121.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 121.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 121.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 121.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 121.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 120.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 119.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 118.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 118.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 117.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 117.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 116.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 116.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 116.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 115.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 115.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 114.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 113.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 113.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 112.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 112.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 111.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 109.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 109.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 108.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 108.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 108.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 108.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 108.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 108.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 108.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 107.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 107.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 107.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 107.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 106.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 106.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 105.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 105.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 104.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 104.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 104.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 101.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 100.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 100.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 100.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 100.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 100.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 97.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 97.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 96.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 95.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 95.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 95.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 95.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 95.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 95.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 94.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 94.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 93.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 92.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 92.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 91.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 90.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 90.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 90.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 90.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 89.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 89.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 89.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 88.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 88.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 88.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 88.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 87.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 86.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 86.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 85.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 85.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 84.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 84.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 84.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 84.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 83.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 83.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 82.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 80.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 80.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 80.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 79.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 79.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 78.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 78.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 78.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 78.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 77.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 77.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 76.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 76.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 75.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 73.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 71.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 70.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 68.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 67.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 67.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 66.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 62.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 62.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 62.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 57.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 56.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 55.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 52.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 51.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 49.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 47.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 45.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

255.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 255.6
FF:10151-102I7 76 years, female 255.6

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