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  • TISSUE

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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:175.2 nTPM
HPA Brain:122.8 nTPM
GTEx:175.2 nTPM
FANTOM5:73.3 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.8
Sample id Sample description nTPM
Amygdala
nTPM: 122.8
2695 Female, age 67, right hemisphere 175.4
2814 Male, age 76, right hemisphere 161.7
2514 Male, age 75, right hemisphere 105.9
1987 Female, age 91, left hemisphere 93.8
2517 Female, age 94, left hemisphere 77.1
Basal amygdala
nTPM: 76.3
2609 Male, age 75, right hemisphere 128.9
1955 Male, age 76, both hemispheres 84.6
2110 Male, age 80, left hemisphere 73.7
2243 Female, age 91, right hemisphere 67.6
2685 Female, age 94, left hemisphere 60.1
2827 Female, age 67, right hemisphere 42.7
Central amygdala
nTPM: 75.9
1905 Male, age 76, both hemispheres 104.6
2515 Male, age 75, right hemisphere 93.3
2701 Female, age 91, right hemisphere 71.7
2826 Female, age 94, left hemisphere 59.7
2239 Male, age 80, left hemisphere 50.2
Corticomedial amygdala
nTPM: 68.5
2428 Male, age 75, right hemisphere 102.0
2829 Male, age 80, left hemisphere 88.5
2240 Male, age 76, both hemispheres 73.3
2429 Female, age 94, left hemisphere 60.0
2242 Female, age 91, right hemisphere 47.3
2535 Female, age 67, right hemisphere 39.7
Lateral amygdala
nTPM: 61.5
1883 Male, age 76, both hemispheres 103.8
2516 Male, age 75, right hemisphere 87.5
2255 Female, age 91, right hemisphere 54.2
2256 Male, age 80, left hemisphere 45.2
2830 Female, age 67, right hemisphere 44.4
2534 Female, age 94, left hemisphere 33.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 175.2
Samples: 181

Max nTPM: 666.7
Min nTPM: 35.9
Std nTPM: 118.2
Median nTPM: 136.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 666.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 666.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 555.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 539.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 525.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 492.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 481.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 458.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 436.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 412.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 409.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 403.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 399.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 379.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 363.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 350.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 346.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 343.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 339.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 318.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 310.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 305.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 303.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 302.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 294.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 288.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 286.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 284.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 277.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 264.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 264.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 252.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 251.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 250.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 250.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 248.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 248.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 243.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 236.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 235.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 234.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 227.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 223.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 215.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 211.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 211.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 204.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 203.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 202.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 200.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 197.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 195.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 195.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 194.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 193.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 193.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 192.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 191.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 188.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 187.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 187.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 186.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 185.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 183.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 178.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 172.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 167.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 167.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 166.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 164.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 159.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 157.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 156.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 156.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 155.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 154.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 153.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 151.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 149.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 146.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 146.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 145.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 144.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 144.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 143.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 142.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 142.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 142.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 140.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 139.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 136.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 136.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 136.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 136.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 133.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 133.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 132.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 132.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 127.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 125.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 122.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 122.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 122.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 121.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 121.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 119.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 114.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 112.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 112.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 111.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 110.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 106.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 106.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 106.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 105.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 105.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 104.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 104.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 104.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 103.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 103.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 102.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 102.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 102.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 101.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 101.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 100.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 100.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 99.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 98.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 97.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 94.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 90.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 90.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 89.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 88.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 88.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 86.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 86.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 85.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 83.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 81.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 80.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 79.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 73.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 73.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 73.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 68.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 67.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 67.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 64.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 64.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 63.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 60.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 60.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 59.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 55.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 49.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 46.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 45.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 41.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 39.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 35.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 73.3
FF:10151-102I7 76 years, female 73.3

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