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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:124.1 nTPM
HPA Brain:131.4 nTPM
GTEx:124.1 nTPM
FANTOM5:284.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 131.4
2048 Male, age 55, midline 164.6
1981 Female, age 72, midline 162.2
2565 Male, age 75, midline 123.2
2816 Male, age 47, midline 114.4
2194 Female, age 79, both hemispheres 92.8
Cervical spinal cord, dorsal horn
nTPM: 88.8
2173 Female, age 72, unknown 133.0
1877 Male, age 55, unknown 109.0
2721 Male, age 90, both hemispheres 92.2
2069 Male, age 47, both hemispheres 71.2
2296 Male, age 66, both hemispheres 65.4
2297 Male, age 75, both hemispheres 62.1
Cervical spinal cord, ventral horn
nTPM: 127.7
2480 Male, age 75, both hemispheres 167.3
2098 Female, age 72, unknown 161.2
2809 Male, age 90, both hemispheres 154.3
2295 Male, age 66, both hemispheres 121.9
2068 Male, age 55, unknown 89.1
2820 Female, age 79, both hemispheres 72.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 124.1
Samples: 204

Max nTPM: 689.4
Min nTPM: 29.1
Std nTPM: 69.9
Median nTPM: 111.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 689.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 377.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 373.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 319.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 319.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 317.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 247.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 238.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 234.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 216.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 216.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 211.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 207.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 205.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 201.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 201.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 200.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 195.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 190.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 189.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 186.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 186.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 185.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 183.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 183.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 182.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 181.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 180.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 178.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 175.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 175.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 174.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 174.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 172.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 172.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 170.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 169.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 168.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 167.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 167.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 166.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 166.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 165.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 164.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 164.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 163.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 163.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 163.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 161.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 161.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 160.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 159.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 152.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 151.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 150.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 148.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 146.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 143.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 140.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 140.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 138.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 137.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 137.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 136.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 136.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 135.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 134.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 133.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 133.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 132.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 132.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 129.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 128.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 128.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 128.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 127.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 126.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 126.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 125.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 124.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 122.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 122.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 121.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 121.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 121.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 121.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 121.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 120.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 119.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 119.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 117.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 117.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 116.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 115.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 114.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 114.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 114.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 114.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 113.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 111.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 111.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 110.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 108.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 108.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 108.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 107.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 105.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 105.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 104.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 103.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 103.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 102.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 102.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 102.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 101.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 100.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 100.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 100.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 99.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 97.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 97.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 97.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 96.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 96.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 96.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 95.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 95.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 95.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 94.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 93.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 92.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 91.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 91.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 91.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 91.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 90.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 90.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 89.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 88.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 88.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 87.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 87.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 86.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 85.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 85.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 84.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 84.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 83.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 83.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 83.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 81.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 80.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 79.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 77.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 77.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 77.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 76.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 76.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 75.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 74.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 74.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 74.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 73.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 71.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 70.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 69.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 69.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 68.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 68.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 68.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 68.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 67.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 65.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 64.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 64.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 63.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 63.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 62.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 62.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 61.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 60.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 60.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 60.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 59.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 59.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 58.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 57.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 57.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 57.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 56.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 55.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 54.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 44.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 43.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 43.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 42.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 37.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 36.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 35.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 35.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 29.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

284.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 284.4
FF:10159-103A6 76 years, female 299.2
FF:10181-103D1 60 years, female 269.5

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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