MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:332.8 nTPM
HPA Brain:192.6 nTPM
GTEx:332.8 nTPM
FANTOM5:138.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 192.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.3
2586 Male, age 75, left hemisphere 155.9
2828 Female, age 72, unknown 155.4
1827 Male, age 72, unknown 131.0
1833 Male, age 53, unknown 106.2
1870 Female, age 42, unknown 101.2
1830 Male, age 51, unknown 87.1
2019 Male, age 18, unknown 75.8
2666 Male, age 74, left hemisphere 75.7
2411 Female, age 72, unknown 73.4
2219 Male, age 76, both hemispheres 61.3
Dorsal raphe nucleus
nTPM: 144.3
1828 Male, age 53, unknown 226.0
2016 Female, age 72, unknown 216.0
2047 Male, age 72, unknown 117.2
2298 Female, age 72, unknown 102.3
2750 Male, age 76, both hemispheres 60.2
Inferior colliculus
nTPM: 141.0
1848 Female, age 42, unknown 156.6
2097 Female, age 72, unknown 146.8
2849 Male, age 72, unknown 133.0
1890 Male, age 53, unknown 127.7
Median raphe nucleus
nTPM: 85.0
2220 Male, age 76, midline 85.0
Periaquaductal grey, anterior
nTPM: 130.0
1795 Male, age 51, unknown 163.3
2502 Female, age 75, unknown 140.9
1947 Male, age 18, unknown 85.8
Periaquaductal grey, dorsal
nTPM: 169.8
2850 Male, age 76, both hemispheres 222.9
1840 Male, age 53, unknown 194.9
1831 Male, age 72, unknown 141.0
2464 Female, age 72, unknown 120.4
Periaquaductal grey, lateral
nTPM: 192.6
2140 Male, age 76, both hemispheres 213.6
2053 Male, age 18, unknown 186.9
2272 Male, age 74, both hemispheres 177.3
Pretectal area
nTPM: 143.4
2273 Male, age 74, both hemispheres 270.4
2667 Female, age 75, unknown 180.0
1944 Female, age 72, unknown 164.9
1816 Male, age 51, unknown 150.5
2825 Male, age 18, unknown 148.3
2316 Male, age 76, right hemisphere 146.4
2224 Female, age 72, unknown 142.4
1817 Female, age 42, unknown 105.0
2407 Male, age 75, both hemispheres 99.4
1815 Male, age 53, unknown 90.2
2007 Male, age 72, unknown 80.5
Red nucleus
nTPM: 112.9
2503 Female, age 72, unknown 151.0
1821 Female, age 72, unknown 138.9
2823 Male, age 76, right hemisphere 127.2
2769 Male, age 72, unknown 126.3
2725 Female, age 75, unknown 124.0
2227 Male, age 72, unknown 119.2
1954 Female, age 42, unknown 118.4
2588 Male, age 74, left hemisphere 97.3
2584 Male, age 75, left hemisphere 96.6
2785 Male, age 18, unknown 88.7
1904 Male, age 53, unknown 86.3
1865 Male, age 51, unknown 81.1
Substantia nigra
nTPM: 157.3
2699 Male, age 18, unknown 294.3
2409 Female, age 72, unknown 192.0
1851 Male, age 51, unknown 182.0
1916 Female, age 42, unknown 164.8
2241 Male, age 72, unknown 162.2
1889 Female, age 72, unknown 142.7
2590 Female, age 75, unknown 127.9
2665 Male, age 74, both hemispheres 122.7
2583 Male, age 75, right hemisphere 100.0
1941 Male, age 53, unknown 84.3
Superior colliculus
nTPM: 143.1
1995 Male, age 72, unknown 177.9
2587 Male, age 74, left hemisphere 172.8
2664 Male, age 75, both hemispheres 171.8
2261 Male, age 18, unknown 155.4
1839 Male, age 51, unknown 149.6
1796 Male, age 53, unknown 148.3
1913 Female, age 42, unknown 133.2
2087 Female, age 72, unknown 125.3
1895 Male, age 76, right hemisphere 99.0
2668 Female, age 75, unknown 97.6
Ventral tegmental area
nTPM: 137.0
2021 Male, age 53, unknown 205.9
1915 Female, age 42, unknown 152.1
2410 Female, age 72, unknown 148.1
2218 Male, age 76, both hemispheres 121.6
1942 Male, age 51, unknown 106.5
2223 Female, age 72, unknown 87.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 332.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 332.8
Samples: 183

Max nTPM: 1573.3
Min nTPM: 43.0
Std nTPM: 239.3
Median nTPM: 276.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1573.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1495.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1494.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 1145.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 811.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 775.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 770.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 747.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 709.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 700.8
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 684.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.0
FF:10158-103A5 76 years, female 138.0

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