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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
23.2
nTPM
HPA Brain:
29.5
nTPM
GTEx:
23.2
nTPM
FANTOM5:
60.9
Scaled Tags Per Million
Pig:
53.8
nTPM
Mouse:
56.7
nTPM
Allen mouse:
1.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
29.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 19.7
1827
Male, age 72, unknown
25.9
2411
Female, age 72, unknown
22.7
1870
Female, age 42, unknown
21.8
2666
Male, age 74, left hemisphere
20.8
2219
Male, age 76, both hemispheres
20.6
2019
Male, age 18, unknown
19.8
2586
Male, age 75, left hemisphere
18.3
1833
Male, age 53, unknown
16.4
2828
Female, age 72, unknown
15.2
1830
Male, age 51, unknown
15.1
Dorsal raphe nucleus nTPM: 21.5
2298
Female, age 72, unknown
32.1
2750
Male, age 76, both hemispheres
23.6
2047
Male, age 72, unknown
21.2
1828
Male, age 53, unknown
18.3
2016
Female, age 72, unknown
12.5
Inferior colliculus nTPM: 17.4
2097
Female, age 72, unknown
21.5
1848
Female, age 42, unknown
19.0
2849
Male, age 72, unknown
15.7
1890
Male, age 53, unknown
13.6
Median raphe nucleus nTPM: 29.5
2220
Male, age 76, midline
29.5
Periaquaductal grey, anterior nTPM: 23.6
1947
Male, age 18, unknown
24.3
1795
Male, age 51, unknown
23.3
2502
Female, age 75, unknown
23.1
Periaquaductal grey, dorsal nTPM: 17.1
1840
Male, age 53, unknown
21.1
1831
Male, age 72, unknown
16.3
2464
Female, age 72, unknown
16.3
2850
Male, age 76, both hemispheres
14.8
Periaquaductal grey, lateral nTPM: 16.9
2053
Male, age 18, unknown
19.4
2272
Male, age 74, both hemispheres
17.7
2140
Male, age 76, both hemispheres
13.5
Pretectal area nTPM: 27.2
1816
Male, age 51, unknown
40.0
1944
Female, age 72, unknown
35.2
2007
Male, age 72, unknown
33.6
1817
Female, age 42, unknown
31.7
2667
Female, age 75, unknown
31.7
1815
Male, age 53, unknown
30.7
2224
Female, age 72, unknown
23.4
2407
Male, age 75, both hemispheres
23.4
2825
Male, age 18, unknown
18.6
2273
Male, age 74, both hemispheres
17.7
2316
Male, age 76, right hemisphere
12.9
Red nucleus nTPM: 15.1
1821
Female, age 72, unknown
22.3
2584
Male, age 75, left hemisphere
22.3
2785
Male, age 18, unknown
19.1
2588
Male, age 74, left hemisphere
16.0
1954
Female, age 42, unknown
14.5
1865
Male, age 51, unknown
14.2
2725
Female, age 75, unknown
13.3
1904
Male, age 53, unknown
13.1
2503
Female, age 72, unknown
12.9
2769
Male, age 72, unknown
12.2
2227
Male, age 72, unknown
11.7
2823
Male, age 76, right hemisphere
9.5
Substantia nigra nTPM: 23.6
1916
Female, age 42, unknown
32.4
1889
Female, age 72, unknown
32.3
1941
Male, age 53, unknown
28.7
2241
Male, age 72, unknown
28.6
1851
Male, age 51, unknown
27.9
2590
Female, age 75, unknown
21.4
2409
Female, age 72, unknown
19.9
2583
Male, age 75, right hemisphere
18.1
2699
Male, age 18, unknown
14.0
2665
Male, age 74, both hemispheres
12.4
Superior colliculus nTPM: 21.1
2261
Male, age 18, unknown
28.7
2087
Female, age 72, unknown
27.0
1796
Male, age 53, unknown
25.8
1895
Male, age 76, right hemisphere
22.0
2668
Female, age 75, unknown
19.9
1913
Female, age 42, unknown
19.4
2587
Male, age 74, left hemisphere
18.1
1839
Male, age 51, unknown
17.8
2664
Male, age 75, both hemispheres
16.7
1995
Male, age 72, unknown
15.4
Ventral tegmental area nTPM: 22.1
2410
Female, age 72, unknown
28.2
2218
Male, age 76, both hemispheres
26.7
1915
Female, age 42, unknown
23.6
2223
Female, age 72, unknown
19.5
1942
Male, age 51, unknown
17.3
2021
Male, age 53, unknown
17.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
23.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 23.2
Samples: 139
Max nTPM: 78.9
Min nTPM: 6.9
Std nTPM: 13.3
Median nTPM: 19.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
78.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
78.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
74.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
64.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
50.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
47.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
45.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
45.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
44.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
43.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
41.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
41.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
39.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
39.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
38.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
38.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
37.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
37.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
37.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
36.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
36.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
35.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
35.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
34.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
33.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
33.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
32.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
31.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
31.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
30.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
30.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
29.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
29.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
28.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
28.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
28.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
27.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
27.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
26.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
26.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
25.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
25.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
25.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
25.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
25.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
24.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
24.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
24.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
24.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
24.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
23.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
23.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
23.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
23.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
22.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
22.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
21.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
21.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
21.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
21.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
20.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
20.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
20.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
19.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
19.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
19.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
19.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
18.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
18.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
18.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
18.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
18.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
18.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
17.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
17.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
17.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
17.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
16.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
16.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
16.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
15.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
15.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
15.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
15.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
15.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
15.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
15.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
14.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
14.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
14.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
14.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
14.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
14.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
14.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
13.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
13.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
13.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
13.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
13.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
13.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
12.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
12.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
12.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
12.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
12.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
12.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
12.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
11.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
11.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
11.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
11.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
11.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
11.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
11.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
10.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
10.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
10.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
9.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
9.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
9.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
9.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
9.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
9.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
8.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
8.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
7.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
6.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
56.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 56.7
Samples: 4
Max nTPM: 58.6
Min nTPM: 55.2
Sample A
Male
58.6
Sample B
Male
56.0
Sample C
Female
57.0
Sample D
Female
55.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.