MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.8 nTPM
HPA Brain:10.3 nTPM
GTEx:85.8 nTPM
FANTOM5:162.9 Scaled Tags Per Million
Pig:149.7 nTPM
Mouse:113.8 nTPM
Allen mouse:4.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.3
2019 Male, age 18, unknown 12.9
1827 Male, age 72, unknown 12.2
2411 Female, age 72, unknown 10.5
2586 Male, age 75, left hemisphere 9.9
1833 Male, age 53, unknown 9.4
2828 Female, age 72, unknown 8.8
1830 Male, age 51, unknown 8.6
1870 Female, age 42, unknown 8.5
2666 Male, age 74, left hemisphere 6.9
2219 Male, age 76, both hemispheres 5.7
Dorsal raphe nucleus
nTPM: 10.0
2298 Female, age 72, unknown 11.7
2016 Female, age 72, unknown 11.0
1828 Male, age 53, unknown 9.5
2047 Male, age 72, unknown 8.8
2750 Male, age 76, both hemispheres 8.7
Inferior colliculus
nTPM: 8.8
2097 Female, age 72, unknown 11.0
1890 Male, age 53, unknown 8.6
1848 Female, age 42, unknown 8.3
2849 Male, age 72, unknown 7.2
Median raphe nucleus
nTPM: 5.5
2220 Male, age 76, midline 5.5
Periaquaductal grey, anterior
nTPM: 10.3
2502 Female, age 75, unknown 12.8
1947 Male, age 18, unknown 10.1
1795 Male, age 51, unknown 8.1
Periaquaductal grey, dorsal
nTPM: 8.8
1840 Male, age 53, unknown 10.9
1831 Male, age 72, unknown 9.6
2464 Female, age 72, unknown 8.2
2850 Male, age 76, both hemispheres 6.6
Periaquaductal grey, lateral
nTPM: 8.7
2140 Male, age 76, both hemispheres 10.4
2272 Male, age 74, both hemispheres 10.3
2053 Male, age 18, unknown 5.5
Pretectal area
nTPM: 9.1
2273 Male, age 74, both hemispheres 12.2
2316 Male, age 76, right hemisphere 11.0
2407 Male, age 75, both hemispheres 10.9
2007 Male, age 72, unknown 10.1
1815 Male, age 53, unknown 8.6
1817 Female, age 42, unknown 8.5
1944 Female, age 72, unknown 8.5
2825 Male, age 18, unknown 8.2
2224 Female, age 72, unknown 8.1
1816 Male, age 51, unknown 7.9
2667 Female, age 75, unknown 6.0
Red nucleus
nTPM: 8.9
1821 Female, age 72, unknown 10.5
2503 Female, age 72, unknown 9.7
2584 Male, age 75, left hemisphere 9.7
2588 Male, age 74, left hemisphere 9.6
2769 Male, age 72, unknown 9.5
1865 Male, age 51, unknown 9.3
2227 Male, age 72, unknown 9.1
1904 Male, age 53, unknown 8.9
2785 Male, age 18, unknown 8.9
1954 Female, age 42, unknown 8.2
2823 Male, age 76, right hemisphere 8.2
2725 Female, age 75, unknown 5.3
Substantia nigra
nTPM: 8.3
2590 Female, age 75, unknown 13.7
2583 Male, age 75, right hemisphere 11.1
1851 Male, age 51, unknown 9.1
1889 Female, age 72, unknown 8.5
1941 Male, age 53, unknown 8.4
1916 Female, age 42, unknown 7.5
2409 Female, age 72, unknown 7.4
2665 Male, age 74, both hemispheres 6.3
2699 Male, age 18, unknown 6.0
2241 Male, age 72, unknown 4.9
Superior colliculus
nTPM: 9.3
2261 Male, age 18, unknown 13.5
2664 Male, age 75, both hemispheres 11.5
1995 Male, age 72, unknown 10.4
2668 Female, age 75, unknown 10.1
1839 Male, age 51, unknown 9.3
2087 Female, age 72, unknown 8.7
1895 Male, age 76, right hemisphere 8.4
1913 Female, age 42, unknown 8.4
2587 Male, age 74, left hemisphere 7.7
1796 Male, age 53, unknown 4.9
Ventral tegmental area
nTPM: 6.7
2021 Male, age 53, unknown 9.4
1942 Male, age 51, unknown 7.7
1915 Female, age 42, unknown 7.3
2223 Female, age 72, unknown 6.5
2410 Female, age 72, unknown 6.4
2218 Male, age 76, both hemispheres 2.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.8
Samples: 183

Max nTPM: 220.4
Min nTPM: 52.1
Std nTPM: 21.8
Median nTPM: 81.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 220.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 197.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 175.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 141.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 136.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 134.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 131.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 131.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 127.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 127.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 124.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 162.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.9
FF:10158-103A5 76 years, female 162.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 149.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 149.7
Samples: 4

Max nTPM: 171.7
Min nTPM: 138.2
Sample A Female 146.5
Sample B Female 142.3
Sample C Male 138.2
Sample D Male 171.7
Midbrain
nTPM: 148.8
Samples: 4

Max nTPM: 180.1
Min nTPM: 129.1
Sample A Female 180.1
Sample B Female 145.5
Sample C Male 129.1
Sample D Male 140.3
Periaqueductal gray
nTPM: 144.8
Samples: 3

Max nTPM: 146.5
Min nTPM: 143.7
Sample B Female 143.7
Sample C Male 144.1
Sample D Male 146.5
Superior colliculi
nTPM: 140.8
Samples: 4

Max nTPM: 148.9
Min nTPM: 130.1
Sample A Female 143.4
Sample B Female 140.6
Sample C Male 130.1
Sample D Male 148.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 116.8
Min nTPM: 111.5
Sample A Male 114.8
Sample B Male 111.5
Sample C Female 116.8
Sample D Female 112.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
68148739 Antisense, RP_041116_02_A11, Mouse strain C57BL/6J (56 days, male) 4.5

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