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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:661.0 nTPM
HPA Brain:1022.2 nTPM
GTEx:661.0 nTPM
FANTOM5:2117.3 Scaled Tags Per Million
Mouse:1578.5 nTPM
Allen mouse:21.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1022.2
Sample id Sample description nTPM
Amygdala
nTPM: 921.7
2814 Male, age 76, right hemisphere 1243.2
1987 Female, age 91, left hemisphere 864.8
2514 Male, age 75, right hemisphere 848.4
2517 Female, age 94, left hemisphere 835.3
2695 Female, age 67, right hemisphere 816.6
Basal amygdala
nTPM: 955.9
2243 Female, age 91, right hemisphere 1177.4
2110 Male, age 80, left hemisphere 1018.5
1955 Male, age 76, both hemispheres 987.8
2609 Male, age 75, right hemisphere 905.6
2685 Female, age 94, left hemisphere 900.4
2827 Female, age 67, right hemisphere 745.7
Central amygdala
nTPM: 936.3
1905 Male, age 76, both hemispheres 1041.6
2826 Female, age 94, left hemisphere 1023.9
2239 Male, age 80, left hemisphere 979.6
2515 Male, age 75, right hemisphere 834.7
2701 Female, age 91, right hemisphere 801.6
Corticomedial amygdala
nTPM: 1022.2
2829 Male, age 80, left hemisphere 1280.4
2242 Female, age 91, right hemisphere 1219.9
2240 Male, age 76, both hemispheres 1129.3
2428 Male, age 75, right hemisphere 957.4
2429 Female, age 94, left hemisphere 881.6
2535 Female, age 67, right hemisphere 664.4
Lateral amygdala
nTPM: 831.5
1883 Male, age 76, both hemispheres 1049.0
2534 Female, age 94, left hemisphere 975.7
2516 Male, age 75, right hemisphere 844.1
2830 Female, age 67, right hemisphere 767.8
2255 Female, age 91, right hemisphere 681.1
2256 Male, age 80, left hemisphere 671.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

661.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 661.0
Samples: 181

Max nTPM: 1617.8
Min nTPM: 272.0
Std nTPM: 252.9
Median nTPM: 628.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1617.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1561.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1438.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1346.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1309.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1185.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1179.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1161.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1074.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1066.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1044.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1039.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1033.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1030.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1011.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 995.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 994.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 989.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 981.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 975.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 965.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 960.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 959.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 934.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 931.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 929.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 929.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 928.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 923.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 904.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 895.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 880.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 873.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 870.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 862.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 859.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 854.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 845.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 843.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 843.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 842.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 832.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 821.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 817.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 816.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 816.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 814.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 810.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 810.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 810.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 806.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 806.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 802.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 792.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 784.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 779.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 775.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 768.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 767.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 763.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 750.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 748.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 744.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 730.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 723.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 722.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 719.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 711.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 704.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 700.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 695.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 695.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 688.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 688.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 685.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 682.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 678.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 676.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 674.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 670.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 667.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 667.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 664.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 662.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 657.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 649.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 649.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 646.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 631.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 631.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 628.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 621.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 619.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 618.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 617.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 608.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 607.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 601.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 587.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 587.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 580.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 574.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 571.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 566.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 560.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 555.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 555.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 553.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 551.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 544.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 544.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 534.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 531.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 530.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 529.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 524.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 518.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 518.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 510.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 509.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 503.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 502.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 501.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 499.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 499.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 493.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 487.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 479.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 478.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 473.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 472.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 472.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 470.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 466.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 465.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 465.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 459.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 458.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 453.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 452.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 434.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 430.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 429.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 425.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 424.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 422.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 420.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 419.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 419.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 417.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 416.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 416.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 409.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 399.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 398.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 394.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 393.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 392.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 389.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 388.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 385.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 384.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 378.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 372.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 368.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 359.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 358.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 355.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 347.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 340.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 339.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 333.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 333.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 332.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 332.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 329.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 327.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 324.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 313.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 305.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 272.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2117.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 2117.3
FF:10151-102I7 76 years, female 2117.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1578.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1578.5
Samples: 4

Max nTPM: 1771.6
Min nTPM: 1442.2
Sample A Male 1442.2
Sample B Male 1570.4
Sample C Female 1771.6
Sample D Female 1529.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.9
179 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 21.9
180 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 15.5

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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